6IUH

Crystal structure of GIT1 PBD domain in complex with Liprin-alpha2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	FAT domain-like	8106681	3001881	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FAT domain-like	8106681	3001881	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GIT1_C	e6iuhA1	A: alpha bundles	X: Four-helical up-and-down bundle	H: FAT domain of focal adhesion kinase (From Topology)	T: FAT domain of focal adhesion kinase	F: GIT1_C	ECOD (1.6)
B	GIT1_C	e6iuhB1	A: alpha bundles	X: Four-helical up-and-down bundle	H: FAT domain of focal adhesion kinase (From Topology)	T: FAT domain of focal adhesion kinase	F: GIT1_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.330	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Nucleotidyltransferases domain 2	CATH (4.3.0)
B	1.20.120.330	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Nucleotidyltransferases domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12205	G protein-coupled receptor kinase-interacting protein 1 C term (GIT1_C)	G protein-coupled receptor kinase-interacting protein 1 C term	This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with Pfam:PF01412, Pfam:PF00023, Pfam:PF08518. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodel ...	This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with Pfam:PF01412, Pfam:PF00023, Pfam:PF08518. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodelling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C terminal and the LD motifs of paxillin. The C terminal folds into a four helix bundle.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	ARF GTPase-activating protein GIT1	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein phosphatase binding phosphatase binding small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein phosphatase binding phosphatase binding protein-containing complex binding protein tyrosine kinase binding kinase binding protein kinase binding cation binding ion binding metal ion binding small molecule binding identical protein binding structural constituent of postsynapse structural molecule activity structural constituent of synapse structural constituent of postsynaptic specialization scaffold protein binding cytoskeletal protein binding gamma-tubulin binding tubulin binding	protein localization protein localization to postsynaptic specialization membrane cellular localization protein localization to postsynaptic membrane protein localization to cell periphery protein localization to synapse biological regulation localization within membrane protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane localization regulation of postsynaptic membrane neurotransmitter receptor levels protein localization to organelle cellular macromolecule localization protein localization protein localization to postsynaptic specialization membrane cellular localization protein localization to postsynaptic membrane protein localization to cell periphery protein localization to synapse biological regulation localization within membrane protein localization to membrane protein-containing complex localization neurotransmitter receptor localization to postsynaptic specialization membrane localization regulation of postsynaptic membrane neurotransmitter receptor levels protein localization to organelle cellular macromolecule localization macromolecule localization cellular process protein localization to postsynapse regulation of biological quality protein localization to cell junction receptor localization to synapse regulation of defense response response to stimulus regulation of response to external stimulus negative regulation of inflammatory response negative regulation of biological process regulation of response to wounding response to stress regulation of response to stress response to wounding regulation of biological process regulation of inflammatory response to wounding defense response negative regulation of response to stimulus response to external stimulus regulation of inflammatory response negative regulation of response to wounding negative regulation of inflammatory response to wounding regulation of response to stimulus negative regulation of response to external stimulus inflammatory response to wounding negative regulation of defense response inflammatory response developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development trans-synaptic signaling regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular response to stimulus small GTPase-mediated signal transduction negative regulation of signaling regulation of small GTPase mediated signal transduction negative regulation of intracellular signal transduction regulation of signal transduction ARF protein signal transduction intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction regulation of ARF protein signal transduction intracellular signaling cassette negative regulation of cellular process signal transduction negative regulation of small GTPase mediated signal transduction negative regulation of signal transduction negative regulation of ARF protein signal transduction cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway pyridine nucleotide catabolic process oxoacid metabolic process carbohydrate catabolic process organophosphate catabolic process carbohydrate derivative metabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process regulation of primary metabolic process regulation of ATP metabolic process cellular catabolic process regulation of purine nucleotide catabolic process negative regulation of nucleotide metabolic process heterocycle metabolic process regulation of small molecule metabolic process regulation of nucleotide metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process negative regulation of carbohydrate metabolic process nucleoside phosphate metabolic process organonitrogen compound catabolic process pyruvate metabolic process cellular metabolic process negative regulation of metabolic process negative regulation of purine nucleotide catabolic process purine nucleoside diphosphate metabolic process cellular nitrogen compound metabolic process primary metabolic process purine-containing compound catabolic process regulation of purine nucleotide metabolic process cellular nitrogen compound catabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process heterocycle catabolic process metabolic process regulation of phosphorus metabolic process monocarboxylic acid metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process ATP metabolic process negative regulation of purine nucleotide metabolic process negative regulation of phosphate metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process nitrogen compound metabolic process negative regulation of nucleotide catabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process organic cyclic compound catabolic process purine-containing compound metabolic process ADP metabolic process negative regulation of phosphorus metabolic process purine ribonucleoside diphosphate metabolic process organic substance catabolic process purine ribonucleoside diphosphate catabolic process cellular aromatic compound metabolic process ribonucleotide catabolic process negative regulation of small molecule metabolic process negative regulation of glycolytic process negative regulation of nitrogen compound metabolic process negative regulation of ATP metabolic process negative regulation of cellular metabolic process nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process glycolytic process pyridine-containing compound metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process phosphorus metabolic process pyridine nucleotide metabolic process nicotinamide nucleotide metabolic process regulation of carbohydrate catabolic process regulation of cellular metabolic process aromatic compound catabolic process nucleotide metabolic process organic cyclic compound metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process regulation of metabolic process negative regulation of cellular catabolic process catabolic process organic substance metabolic process purine nucleotide metabolic process ribonucleotide metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process ribonucleoside triphosphate metabolic process negative regulation of catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process organonitrogen compound metabolic process ADP catabolic process carboxylic acid metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of glycolytic process organophosphate metabolic process regulation of cellular catabolic process receptor catabolic process positive regulation of biological process positive regulation of cellular metabolic process macromolecule catabolic process positive regulation of metabolic process receptor metabolic process positive regulation of macromolecule metabolic process positive regulation of receptor catabolic process positive regulation of cellular process regulation of macromolecule metabolic process positive regulation of catabolic process regulation of receptor catabolic process positive regulation of cellular catabolic process macromolecule metabolic process ossification direct ossification intramembranous ossification regulation of cytokinesis regulation of cell cycle process cytokinesis regulation of cell division cell division cell cycle regulation of cell cycle cell cycle process G protein-coupled receptor signaling pathway regulation of G protein-coupled receptor signaling pathway cell redox homeostasis cellular homeostasis homeostatic process dendritic spine development plasma membrane bounded cell projection organization cellular developmental process cell projection organization cell development neuron projection development cellular component organization generation of neurons neurogenesis neuron differentiation dendrite development cell differentiation neuron development cellular component organization or biogenesis behavior system process learning learning or memory nervous system process motor learning cognition regulation of localization regulated exocytosis transport synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport vesicle-mediated transport in synapse regulation of regulated secretory pathway regulation of secretion by cell secretion by cell signal release establishment of localization in cell neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell neurotransmitter transport regulation of vesicle-mediated transport establishment of localization regulation of secretion signal release from synapse exocytosis regulation of neurotransmitter secretion regulation of exocytosis locomotory behavior synaptic vesicle recycling interleukin-1 production cellular biosynthetic process regulation of interleukin-1 beta production negative regulation of interleukin-1 beta production negative regulation of interleukin-1 production regulation of cytokine production organic substance biosynthetic process cytokine production regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of interleukin-1 production negative regulation of cytokine production gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process interleukin-1 beta production negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process negative regulation of multicellular organismal process response to organic substance biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid cellular response to organic substance response to external biotic stimulus response to molecule of bacterial origin positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization positive regulation of cellular component organization microtubule cytoskeleton organization cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly microtubule polymerization or depolymerization cellular component assembly positive regulation of protein polymerization protein-containing complex assembly protein polymerization positive regulation of microtubule nucleation positive regulation of microtubule polymerization or depolymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process microtubule polymerization regulation of cellular component biogenesis positive regulation of supramolecular fiber organization regulation of microtubule nucleation regulation of organelle organization organelle organization microtubule nucleation regulation of microtubule polymerization regulation of protein polymerization positive regulation of microtubule polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization cytoskeleton organization regulation of microtubule cytoskeleton organization immunological synapse formation cell-cell recognition immune system process cell activation cell recognition lymphocyte activation leukocyte activation cellular response to endogenous stimulus cellular response to growth factor stimulus response to endogenous stimulus cellular response to epidermal growth factor stimulus response to epidermal growth factor response to growth factor	cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol somatodendritic compartment dendrite dendritic tree neuron projection synapse cell junction cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol somatodendritic compartment dendrite dendritic tree neuron projection synapse cell junction glutamatergic synapse axon axon terminus presynapse distal axon calyx of Held neuron projection terminus mitotic spindle spindle intracellular organelle cytoskeleton organelle mitotic spindle pole intracellular non-membrane-bounded organelle spindle pole microtubule cytoskeleton non-membrane-bounded organelle postsynapse inhibitory synapse anchoring junction focal adhesion cell-substrate junction centrosome microtubule organizing center growth cone site of polarized growth GABA-ergic synapse membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle vesicle excitatory synapse postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse
C, D	Liprin-alpha-2	structural molecule activity structural constituent of synapse structural constituent of presynapse	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process multicellular organismal process regulation of developmental process cellular developmental process cell projection organization cell development regulation of dendritic spine development neuron projection development cellular component organization neurogenesis multicellular organism development cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process multicellular organismal process regulation of developmental process cellular developmental process cell projection organization cell development regulation of dendritic spine development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation dendrite development cell differentiation anatomical structure development cellular component organization or biogenesis system development developmental process dendritic spine development regulation of biological process plasma membrane bounded cell projection organization biological regulation nervous system development generation of neurons neuron development vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization dense core granule transport transport establishment of vesicle localization intracellular transport dense core granule cytoskeletal transport establishment of localization localization dense core granule localization organelle localization cytosolic transport establishment of localization in cell secretory granule localization cytoskeleton-dependent intracellular transport regulation of cellular process cell projection morphogenesis neuron projection morphogenesis regulation of synapse structure or activity dendritic spine morphogenesis synapse organization regulation of biological quality dendritic spine organization postsynapse organization regulation of cell projection organization regulation of postsynapse organization regulation of neuron projection development regulation of cellular component organization plasma membrane bounded cell projection morphogenesis cell morphogenesis regulation of anatomical structure morphogenesis dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of synapse organization cell junction organization regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization regulation of localization regulated exocytosis modulation of chemical synaptic transmission signaling synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport cell communication vesicle-mediated transport in synapse regulation of regulated secretory pathway synaptic signaling regulation of secretion by cell secretion by cell signal release trans-synaptic signaling regulation of signaling neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell cell-cell signaling neurotransmitter transport regulation of vesicle-mediated transport regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling exocytosis regulation of neurotransmitter secretion anterograde trans-synaptic signaling regulation of exocytosis regulation of cell communication	presynapse synapse cell junction cellular anatomical entity presynaptic active zone extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle presynapse synapse cell junction cellular anatomical entity presynaptic active zone extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle neuron spine neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse dendrite dendritic tree cell surface intracellular anatomical structure cytoplasm cytosol cell periphery membrane plasma membrane presynaptic membrane plasma membrane region synaptic membrane axon transport vesicle intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle synaptic vesicle secretory vesicle exocytic vesicle postsynaptic specialization glutamatergic synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002110	Ankyrin repeat	Repeat
A, B	IPR001164	Arf GTPase activating protein	Domain
A, B	IPR013724	GIT, Spa2 homology (SHD) domain	Domain
A, B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR047161	ARF GTPase-activating protein Git-like	Family
A, B	IPR038508	ArfGAP domain superfamily	Homologous Superfamily
A, B	IPR022018	ARF GTPase-activating protein GIT1, C-terminal	Domain
A, B	IPR037278	ARFGAP/RecO-like zinc finger	Homologous Superfamily
A, B	IPR032352	Arf GTPase-activating protein GIT1/2, coiled-coil domain	Domain
C, D	IPR037621	Liprin-alpha, SAM domain repeat 2	Domain
C, D	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
C, D	IPR037620	Liprin-alpha, SAM domain repeat 1	Domain
C, D	IPR037622	Liprin-alpha, SAM domain repeat 3	Domain
C, D	IPR029515	LAR-interacting protein, Liprin	Family
C, D	IPR001660	Sterile alpha motif domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: O75334	astrocytic tumor large cell medulloblastoma medulloblastoma Pick disease primitive neuroectodermal tumor atypical teratoid rhabdoid tumor malignant ependymoma oligodendroglioma pilocytic astrocytoma glioblastoma malignant glioma ovarian cancer pituitary cancer

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.