6IU6 | pdb_00006iu6

Crystal structure of cytoplasmic metal binding domain with nickel ions

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth I]	UNK_F_TYPE	e6iu6I1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
G [auth H]	UNK_F_TYPE	e6iu6H1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
F	UNK_F_TYPE	e6iu6F1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e6iu6E1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e6iu6D1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6iu6C1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6iu6B1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6iu6A1	A: alpha bundles	X: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	H: Protein regulator of cytokinesis 1 (PRC1) dimerization domain (From Topology)	T: Protein regulator of cytokinesis 1 (PRC1) dimerization domain	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G [auth H], H [auth I]	PF01988	VIT family (VIT1)	VIT family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G [auth H], H [auth I]	VIT1	monoatomic cation transmembrane transporter activity manganese ion transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transition metal ion transmembrane transporter activity metal ion transmembrane transporter activity transmembrane transporter activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cation binding ion binding monoatomic cation transmembrane transporter activity manganese ion transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transition metal ion transmembrane transporter activity metal ion transmembrane transporter activity transmembrane transporter activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity cation binding ion binding metal ion binding small molecule binding	localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport inorganic ion homeostasis homeostatic process manganese ion homeostasis intracellular manganese ion homeostasis cellular homeostasis chemical homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport inorganic ion homeostasis homeostatic process manganese ion homeostasis intracellular manganese ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane vacuole intracellular membrane-bounded organelle intracellular organelle bounding membrane of organelle cellular anatomical structure organelle cytoplasm organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G [auth H], H [auth I]	IPR008217	Ccc1 family	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G [auth H], H [auth I]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Vacuolar Iron Transporter (VIT) Family	iron transporter VIT1 with zinc ions

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.