6IP1 | pdb_00006ip1

alpha-SNAP-SNARE subcomplex in the whole 20S complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySNARE fusion complex 8043665 3001549 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySNARE fusion complex 8043667 3001549 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTPR-like 8098940 3001345 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyTPR-like 8098940 3001345 SCOP2B (2022-06-29)
HSCOP2 FamilyTetratricopeptide repeat (TPR) 8098939 4001344 SCOP2 (2022-06-29)
HSCOP2 SuperfamilyTPR-like 8098940 3001345 SCOP2 (2022-06-29)
GSCOP2B SuperfamilyTPR-like 8098940 3001345 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySNARE fusion complex 8043664 3001549 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ETPR_15e6ip1E1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)
FTPR_15e6ip1F1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)
HTPR_15e6ip1H1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)
GTPR_15e6ip1G1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)
ASynaptobrevine6ip1A1 A: extended segmentsX: Synaptobrevin (From Topology)H: Synaptobrevin (From Topology)T: SynaptobrevinF: SynaptobrevinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05739SNARE domain (SNARE)SNARE domainMost if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE dom ...Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. It is composed of about 70 amino acids arranged in an alpha-helical structure [1].
Domain
PF00957Synaptobrevin (Synaptobrevin)SynaptobrevinThe entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein ...The entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors). In the process of vesicle docking, proteins present on the vesicle (v-SNARE) have to bind to their counterpart on the target membrane (t-SNARE) to form a core complex that can then recruit the soluble proteins NSF and SNAP This so called fusion complex can then disassemble after ATP hydrolysis mediated by the ATPase NSF in a process that leads to membrane fusion and the release of the vesicle contents. v-SNAREs include proteins homologous to synaptobrevi [1, 2, 3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Syntaxin-1A
Synaptosomal-associated protein 25
Synaptosomal-associated protein 25
E, F, G, H
Alpha-soluble NSF attachment protein
Vesicle-associated membrane protein 2