6IE7

Crystal structure of ADCP1 tandem Agenet domain 1-2 in complex with H3K9me2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e6ie7A1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF05641	e6ie7A2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF05641	ECOD (1.6)
C [auth B]	F_UNCLASSIFIED	e6ie7B1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth B]	PF05641	e6ie7B2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF05641	ECOD (1.6)
E [auth C]	F_UNCLASSIFIED	e6ie7C1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth C]	PF05641	e6ie7C2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF05641	ECOD (1.6)
G [auth D]	F_UNCLASSIFIED	e6ie7D1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: F_UNCLASSIFIED	ECOD (1.6)
G [auth D]	PF05641	e6ie7D2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF05641	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], E [auth C], G [auth D]	PF05641	Agenet domain (Agenet)	Agenet domain	This domain is related to the TUDOR domain Pfam:PF00567 [1]. The function of the agenet domain is unknown. This family now matches both the two Agenet domains in the FMR proteins [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], E [auth C], G [auth D]	Agenet domain-containing protein	protein binding binding histone binding methylated histone binding modification-dependent protein binding methylation-dependent protein binding histone reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process protein-DNA complex organization cellular component organization organic substance metabolic process chromatin organization DNA methylation-dependent heterochromatin formation organic substance biosynthetic process negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process protein-DNA complex organization cellular component organization organic substance metabolic process chromatin organization DNA methylation-dependent heterochromatin formation organic substance biosynthetic process negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation protein-containing complex organization epigenetic regulation of gene expression cellular metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process facultative heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process	intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle chromosome, centromeric region chromosome cellular anatomical entity chromosomal region non-membrane-bounded organelle protein-containing complex protein-DNA complex chromatin heterochromatin membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle chromosome, centromeric region chromosome cellular anatomical entity chromosomal region non-membrane-bounded organelle protein-containing complex protein-DNA complex chromatin heterochromatin membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B [auth E], D [auth F], F [auth G], H	H3K9me2 peptide	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], E [auth C], G [auth D]	IPR008395	Agenet-like domain	Domain
A, C [auth B], E [auth C], G [auth D]	IPR014002	Agenet domain, plant type	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth E], D [auth F], F [auth G], H	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.