6I9G | pdb_00006i9g

Crystal structure of encapsulin from Mycolicibacterium hassiacum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
L	SCOP2 Family	Linocin M18-like	8098003	4004781	SCOP2 (2022-06-29)
L	SCOP2 Superfamily	Phage coat protein-like	8098004	3001529	SCOP2 (2022-06-29)
K	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Phage coat protein-like	8098004	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	Linocin_M18	e6i9gO1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
N	Linocin_M18	e6i9gN1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
M	Linocin_M18	e6i9gM1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
L	Linocin_M18	e6i9gL1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
K	Linocin_M18	e6i9gK1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
J	Linocin_M18	e6i9gJ1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
I	Linocin_M18	e6i9gI1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
H	Linocin_M18	e6i9gH1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
G	Linocin_M18	e6i9gG1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
F	Linocin_M18	e6i9gF1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
E	Linocin_M18	e6i9gE1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
D	Linocin_M18	e6i9gD1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
C	Linocin_M18	e6i9gC1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
B	Linocin_M18	e6i9gB1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)
A	Linocin_M18	e6i9gA1	A: a+b three layers	X: Thioredoxin-like	H: Major capsid protein gp5 (From Topology)	T: Major capsid protein gp5	F: Linocin_M18	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
O	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
N	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
M	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
L	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
K	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
J	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
I	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
H	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
G	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
F	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
E	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
D	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
C	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
B	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)
A	3.30.2400.30	Alpha Beta	2-Layer Sandwich	Major capsid protein gp5 fold		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF04454	Encapsulating protein for peroxidase (Linocin_M18)	Encapsulating protein for peroxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Linocin-M18	hydrolase activity catalytic activity	-	cell periphery cellular anatomical structure plasma membrane membrane intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR007544	Type 1 encapsulin shell protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR051429	Encapsulin nanocompartment	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.