6I2R
Crystal structure of the SucA domain of Mycobacterium smegmatis KGD (alpha-ketoglutarate decarboxylase), mutant R802A, in complex with GarA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6i2rb_ | All beta proteins | SMAD/FHA domain | SMAD/FHA domain | automated matches | automated matches | (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], | SCOPe (2.08) |
D | d6i2rd_ | All beta proteins | SMAD/FHA domain | SMAD/FHA domain | automated matches | automated matches | (Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | TK C-terminal domain-like | 8093316 | 3000424 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8093320 | 3001790 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8093319 | 3001790 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8093320 | 3001790 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thiamin diphosphate-binding fold (THDP-binding) | 8093319 | 3001790 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TK C-terminal domain-like | 8093316 | 3000424 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | SMAD/FHA domain-like | 8063033 | 3000137 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | SMAD/FHA domain-like | 8063033 | 3000137 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OxoGdeHyase_C | e6i2rA1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: OxoGdeHyase_C | ECOD (1.6) |
A | E1_dh | e6i2rA3 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
A | Transket_pyr | e6i2rA2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
C | OxoGdeHyase_C | e6i2rC1 | A: a/b three-layered sandwiches | X: TK C-terminal domain-like (From Topology) | H: TK C-terminal domain-like (From Topology) | T: TK C-terminal domain-like | F: OxoGdeHyase_C | ECOD (1.6) |
C | E1_dh | e6i2rC2 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: E1_dh | ECOD (1.6) |
C | Transket_pyr | e6i2rC3 | A: a/b three-layered sandwiches | X: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | H: Thiamin diphosphate-binding fold (THDP-binding) (From Topology) | T: Thiamin diphosphate-binding fold (THDP-binding) | F: Transket_pyr | ECOD (1.6) |
B | FHA | e6i2rB1 | A: beta sandwiches | X: SMAD/FHA domain (From Topology) | H: SMAD/FHA domain (From Topology) | T: SMAD/FHA domain | F: FHA | ECOD (1.6) |
D | FHA | e6i2rD1 | A: beta sandwiches | X: SMAD/FHA domain (From Topology) | H: SMAD/FHA domain (From Topology) | T: SMAD/FHA domain | F: FHA | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02779 | Transketolase, pyrimidine binding domain (Transket_pyr) | Transketolase, pyrimidine binding domain | This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases. | Domain | |
PF16870 | 2-oxoglutarate dehydrogenase C-terminal (OxoGdeHyase_C) | 2-oxoglutarate dehydrogenase C-terminal | - | Family | |
PF00676 | Dehydrogenase E1 component (E1_dh) | Dehydrogenase E1 component | - | Family | |
PF00498 | FHA domain (FHA) | FHA domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001078 | 2-oxoacid dehydrogenase acyltransferase, catalytic domain | Domain | |
IPR042179 | Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily | Homologous Superfamily | |
IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily | |
IPR023213 | Chloramphenicol acetyltransferase-like domain superfamily | Homologous Superfamily | |
IPR032106 | 2-oxoglutarate dehydrogenase E1 component, N-terminal domain | Domain | |
IPR005475 | Transketolase-like, pyrimidine-binding domain | Domain | |
IPR011603 | 2-oxoglutarate dehydrogenase E1 component | Family | |
IPR031717 | 2-oxoglutarate dehydrogenase E1 component/KDG, C-terminal | Domain | |
IPR001017 | Dehydrogenase, E1 component | Domain | |
IPR050923 | Cellular Process Regulator and RNA Processing Protein | Family | |
IPR008984 | SMAD/FHA domain superfamily | Homologous Superfamily | |
IPR000253 | Forkhead-associated (FHA) domain | Domain |