Annotations: 6I07

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6i07a1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6i07b1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF21283	e6i07C1	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase (From Topology)	T: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase	F: PF21283	ECOD (1.6)
C	PF00086	e6i07C2	A: few secondary structure elements	X: Thyroglobulin type-1 domain (From Topology)	H: Thyroglobulin type-1 domain (From Topology)	T: Thyroglobulin type-1 domain	F: PF00086	ECOD (1.6)
C	PF18635	e6i07C3	A: few secondary structure elements	X: N-terminal domain of EpCAM (From Topology)	H: N-terminal domain of EpCAM (From Topology)	T: N-terminal domain of EpCAM	F: PF18635	ECOD (1.6)
D	PF21283	e6i07D1	A: a+b two layers	X: Alpha-beta plaits	H: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase (From Topology)	T: Ferredoxin-like domain of receptor-type protein tyrosine phosphatase	F: PF21283	ECOD (1.6)
D	PF00086	e6i07D2	A: few secondary structure elements	X: Thyroglobulin type-1 domain (From Topology)	H: Thyroglobulin type-1 domain (From Topology)	T: Thyroglobulin type-1 domain	F: PF00086	ECOD (1.6)
D	PF18635	e6i07D3	A: few secondary structure elements	X: N-terminal domain of EpCAM (From Topology)	H: N-terminal domain of EpCAM (From Topology)	T: N-terminal domain of EpCAM	F: PF18635	ECOD (1.6)
A	PF07686	e6i07A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
B	PF07686	e6i07B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D	PF21283	EPCAM/Trop-2, C-terminal (EPCAM-Trop-2_C)	EPCAM/Trop-2, C-terminal	EpCAM (epithelial cell adhesion molecule, also known as Trop-1) and Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) are transmembrane glycoproteins that belong to the tumour-associated calcium signal transducer (TACSTD) f ...	EpCAM (epithelial cell adhesion molecule, also known as Trop-1) and Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) are transmembrane glycoproteins that belong to the tumour-associated calcium signal transducer (TACSTD) family. They are evolutionarily related and both are implicated in signaling triggered by proteolytic cleavage within the ectodomain [1,3]. They share an overall similar structure but differ in their dimers formation. They consist of an ectodomain with an N-terminal, thyroglobulin type-1 (TY, Pfam:PF00086) and C-terminal domains. This entry represents the C-terminal domain of EpCAM and Trop-2, which has an alpha+beta fold [1-3].	Domain
C, D	PF00086	Thyroglobulin type-1 repeat (Thyroglobulin_1)	Thyroglobulin type-1 repeat	Thyroglobulin type 1 repeats are thought to be involved in the control of proteolytic degradation [2]. The domain usually contains six conserved cysteines. These form three disulphide bridges. Cysteines 1 pairs with 2, 3 with 4 and 5 with 6.	Domain
C, D	PF18635	Epithelial cell adhesion molecule, N-terminal domain (EpCAM_N)	Epithelial cell adhesion molecule, N-terminal domain	EpCAM (epithelial cell adhesion molecule), a stem and carcinoma cell marker, is a cell surface protein involved in homotypic cell-cell adhesion via intercellular oligomerization and proliferative signalling via proteolytic cleavage. Structure analysi ...	EpCAM (epithelial cell adhesion molecule), a stem and carcinoma cell marker, is a cell surface protein involved in homotypic cell-cell adhesion via intercellular oligomerization and proliferative signalling via proteolytic cleavage. Structure analysis indicate that it is composed of three domains: N-domain, Thyroglobulin type-1A (TY) domain and the C-terminal domain. This entry represents the small and compact disulphide-rich N-terminal domain of 39 amino-acid residues [1]. Trop-2 (also known as tumor-associated calcium signal transducer 2, TACSTD2) is also included in this entry, as they are evolutionarily related and both are implicated in signaling triggered by proteolytic cleavage within the ectodomain [1-3]. They share an overall similar structure but differ in their dimers formation.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Epithelial cell adhesion molecule	protein-containing complex binding binding cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding protein binding cell adhesion mediator activity cell-cell adhesion mediator activity	regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process ureteric bud development developmental process multicellular organismal process mesonephric epithelium development epithelium development regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process ureteric bud development developmental process multicellular organismal process mesonephric epithelium development epithelium development kidney epithelium development mesonephros development tube development animal organ development tissue development renal system development multicellular organism development anatomical structure development kidney development mesonephric tubule development system development regulation of cell adhesion negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion regulation of cell-cell adhesion mediated by cadherin cellular response to stimulus response to stimulus signaling cellular biosynthetic process cell communication organic substance metabolic process signal transduction involved in regulation of gene expression organic substance biosynthetic process signal transduction regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process stem cell differentiation cellular developmental process cell differentiation regulation of stem cell proliferation positive regulation of stem cell proliferation stem cell proliferation positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process primary metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process organic cyclic compound metabolic process organic cyclic compound biosynthetic process regulation of DNA-templated transcription positive regulation of DNA-templated transcription RNA metabolic process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of biosynthetic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process	cell periphery apical part of cell membrane plasma membrane plasma membrane region cellular anatomical entity apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cell periphery apical part of cell membrane plasma membrane plasma membrane region cellular anatomical entity apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell surface cell-cell junction apical junction complex bicellular tight junction tight junction anchoring junction cell junction basal part of cell basal plasma membrane basolateral plasma membrane lateral plasma membrane
A, B	Single chain Fv	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR043406	Transmembrane glycoprotein EPCAM/Trop-2	Family
C, D	IPR049420	EPCAM/Trop-2, C-terminal	Domain
C, D	IPR041630	Epithelial cell adhesion molecule N-terminal domain	Domain
C, D	IPR036857	Thyroglobulin type-1 superfamily	Homologous Superfamily
C, D	IPR000716	Thyroglobulin type-1	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	Pharos: P16422	Lynch syndrome congenital diarrhea 5 with tufting enteropathy colorectal cancer, hereditary nonpolyposis, type 8 ovarian cancer prostate cancer Lynch syndrome 1 carcinoma sarcomatoid carcinoma Mammary Neoplasms, Experimental pancreatic intraductal papillary-mucinous neoplasm invasive ductal breast carcinoma liver disease psoriasis lung carcinoma acute myeloid leukemia Lynch syndrome congenital diarrhea 5 with tufting enteropathy colorectal cancer, hereditary nonpolyposis, type 8 ovarian cancer prostate cancer Lynch syndrome 1 carcinoma sarcomatoid carcinoma Mammary Neoplasms, Experimental pancreatic intraductal papillary-mucinous neoplasm invasive ductal breast carcinoma liver disease psoriasis lung carcinoma acute myeloid leukemia malignant glioma astrocytic tumor breast carcinoma mammary neoplasms, animal nasopharyngeal carcinoma pancreatic ductal adenocarcinoma interstitial cystitis pancreatic neoplasm large cell medulloblastoma prostate disease lung adenocarcinoma lung disease malignant mesothelioma atypical teratoid rhabdoid tumor malignant pancreatic neoplasm breast disease nephrosclerosis ductal breast carcinoma in situ glioblastoma ovarian disease pancreatic intraductal papillary-mucinous carcinoma intestinal disease periodontitis lung cancer undifferentiated carcinoma malignant ependymoma Barrett esophagus cancer medulloblastoma oligodendroglioma esophageal adenocarcinoma hereditary breast carcinoma ovarian neoplasm

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C, D	PCA	Parent Component: GLN RESID: AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.