Annotations: 6HYP

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MDN1_3rd	e6hypA10	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: MDN1_3rd	ECOD (1.6)
A	MDN1_4th	e6hypA8	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: MDN1_4th	ECOD (1.6)
A	MDN1_2nd	e6hypA7	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: MDN1_2nd	ECOD (1.6)
A	MDN1_1st	e6hypA6	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: MDN1_1st	ECOD (1.6)
A	Sigma54_activat	e6hypA5	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma54_activat	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07728	AAA domain (dynein-related subfamily) (AAA_5)	AAA domain (dynein-related subfamily)	This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model.	Domain
A	PF17865	Midasin AAA lid domain (AAA_lid_5)	Midasin AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. This lid domain is found in midasin proteins.	Domain
A	PF21108	Midasin AAA+ ATPase lid domain (MDN1_4th)	Midasin AAA+ ATPase lid domain	Mdn1 is an essential AAA (ATPase associated with various activities) protein that removes assembly factors from distinct precursors of the ribosomal 60S subunit [2]. This entry represents the AAA domain lid domain.	Domain
A	PF17867	Midasin AAA lid domain (AAA_lid_7)	Midasin AAA lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. This lid domain is found in midasin proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Midasin,Midasin	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	establishment of organelle localization regulation of localization cellular localization ribonucleoprotein complex biogenesis regulation of cellular process nucleocytoplasmic transport transport nuclear transport cellular component biogenesis localization ribosome biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis establishment of organelle localization regulation of localization cellular localization ribonucleoprotein complex biogenesis regulation of cellular process nucleocytoplasmic transport transport nuclear transport cellular component biogenesis localization ribosome biogenesis organelle localization establishment of localization in cell cellular component organization or biogenesis nuclear export ribosome localization ribonucleoprotein complex localization regulation of intracellular transport regulation of ribonucleoprotein complex localization regulation of biological process regulation of transport ribosomal subunit export from nucleus biological regulation regulation of ribosomal subunit export from nucleus intracellular transport regulation of nucleocytoplasmic transport establishment of localization regulation of cellular localization cellular process RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process metabolic process macromolecule metabolic process RNA processing rRNA metabolic process cellular component organization protein-RNA complex organization protein-containing complex organization protein-containing complex remodeling protein-RNA complex remodeling ribosomal large subunit export from nucleus organelle assembly membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly organelle organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribosome assembly	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle nucleolus intracellular organelle lumen organelle lumen membraneless organelle nuclear lumen preribosome protein-containing complex ribonucleoprotein complex preribosome, large subunit precursor nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR048617	Midasin, lid domain 4	Domain
A	IPR011704	ATPase, dynein-related, AAA domain	Domain
A	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
A	IPR025662	Sigma-54 interaction domain, ATP-binding site 1	Binding Site
A	IPR040848	Midasin, AAA lid domain 7	Domain
A	IPR012099	Midasin	Family
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR041190	Midasin AAA lid domain 5	Domain
A	IPR002035	von Willebrand factor, type A	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.