6HSJ | pdb_00006hsj

Crystal structure of the zebrafish peroxisomal SCP2-thiolase (type-1) in complex with CoA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Thiolase_N	e6hsjB2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Thiolase_N	ECOD (1.6)
B	Thiolase_C_1	e6hsjB1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Thiolase_C_1	ECOD (1.6)
A	Thiolase_N	e6hsjA2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Thiolase_N	ECOD (1.6)
A	Thiolase_C_1	e6hsjA1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Thiolase_C_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00108	Thiolase, N-terminal domain (Thiolase_N)	Thiolase, N-terminal domain	Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase.	Domain
B	PF22691	Thiolase C-terminal domain-like (Thiolase_C_1)	Thiolase C-terminal domain-like	This domain is found C-terminal in a number of thiolases and their homologues. Thiolases are essential CoA-dependent enzymes in lipid metabolism. This domain folds into a four-stranded antiparallel beta-sheet with helices packed on one side.	Domain
A	PF00108	Thiolase, N-terminal domain (Thiolase_N)	Thiolase, N-terminal domain	Thiolase is reported to be structurally related to beta-ketoacyl synthase (Pfam:PF00109), and also chalcone synthase.	Domain
A	PF22691	Thiolase C-terminal domain-like (Thiolase_C_1)	Thiolase C-terminal domain-like	This domain is found C-terminal in a number of thiolases and their homologues. Thiolases are essential CoA-dependent enzymes in lipid metabolism. This domain folds into a four-stranded antiparallel beta-sheet with helices packed on one side.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	SCP2-thiolase (type-1)	acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity binding lipid binding myristoyltransferase activity acetyl-CoA C-myristoyltransferase activity	localization transport macromolecule localization lipid localization lipid transport establishment of localization primary metabolic process metabolic process cellular process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle peroxisome microbody
A	SCP2-thiolase (type-1)	acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity acetyl-CoA C-acyltransferase activity C-acyltransferase activity catalytic activity binding lipid binding myristoyltransferase activity acetyl-CoA C-myristoyltransferase activity	localization transport macromolecule localization lipid localization lipid transport establishment of localization primary metabolic process metabolic process cellular process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle peroxisome microbody

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR003033	SCP2 sterol-binding domain	Domain
B	IPR016039	Thiolase-like	Homologous Superfamily
B	IPR055140	Thiolase, C-terminal domain 2	Domain
B	IPR020616	Thiolase, N-terminal	Domain
B	IPR020613	Thiolase, conserved site	Conserved Site
B	IPR036527	SCP2 sterol-binding domain superfamily	Homologous Superfamily
B	IPR020615	Thiolase, acyl-enzyme intermediate active site	Active Site
A	IPR003033	SCP2 sterol-binding domain	Domain
A	IPR016039	Thiolase-like	Homologous Superfamily
A	IPR055140	Thiolase, C-terminal domain 2	Domain
A	IPR020616	Thiolase, N-terminal	Domain
A	IPR020613	Thiolase, conserved site	Conserved Site
A	IPR036527	SCP2 sterol-binding domain superfamily	Homologous Superfamily
A	IPR020615	Thiolase, acyl-enzyme intermediate active site	Active Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.