Annotations: 6HS7

Type VI membrane complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T	SCOP2 Family	T6SS-like	8093463	4005882	SCOP2 (2022-06-29)
T	SCOP2 Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2 (2022-06-29)
S	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Type VI secretion lipoproteins	8093464	3002089	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T	DapB_N	e6hs7T1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
S	DapB_N	e6hs7S1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
R	DapB_N	e6hs7R1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
Q	DapB_N	e6hs7Q1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
P	DapB_N	e6hs7P1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
O	DapB_N	e6hs7O1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
N	DapB_N	e6hs7N1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
M	DapB_N	e6hs7M1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
L	DapB_N	e6hs7L1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
K	DapB_N	e6hs7K1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
J	DapB_N	e6hs7J1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
I	DapB_N	e6hs7I1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
H	DapB_N	e6hs7H1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
G	DapB_N	e6hs7G1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)
F	DapB_N	e6hs7F1	A: alpha arrays	X: PriB N-terminal domain-like	H: Ubiquitin-related	T: Ubiquitin-like	F: DapB_N	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e]	PF06744	Type VI secretion protein IcmF C2-like domain (IcmF_C)	Type VI secretion protein IcmF C2-like domain	IcmF_C family represents a conserved region situated towards the C-terminal end of IcmF-like proteins. It was thought to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells leading to an ...	IcmF_C family represents a conserved region situated towards the C-terminal end of IcmF-like proteins. It was thought to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells leading to an increased conjugation frequency [1]. IcmF as a whole interacts with DotU whereby these bind tightly and form the docking area of the T6SS within the inner membrane. The exact function of this domain is not clear [2].	Domain
A, B, C, D, E, A, B, C, D, E, U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e]	PF21070	Type VI secretion protein IcmF helical domain (IcmF_helical)	Type VI secretion protein IcmF helical domain	This entry represents the alpha-helical domain from the Type VI secretion protein IcmF [1]. This domain is also found in the TssM protein where it forms part of the tip complex [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F, G, H, I, J F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR017734	Type VI secretion system, lipoprotein SciN	Family
F, G, H, I, J F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	IPR038706	Type VI secretion protein SciN-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e]	IPR048677	Type VI secretion system component TssM1, helical domain	Domain
A, B, C, D, E, A, B, C, D, E, U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e]	IPR009612	IcmF-related	Domain
A, B, C, D, E, A, B, C, D, E, U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e]	IPR053156	Type VI secretion system TssM-like	Family
A, B, C, D, E, A, B, C, D, E, U [auth a], V [auth b], W [auth c], X [auth d], Y [auth e]	IPR010623	Type VI secretion system IcmF, C-terminal	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6HS7 | pdb_00006hs7

Type VI membrane complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage