6HCG | pdb_00006hcg

Klebsiella pneumoniae type II secretion system outer membrane complex. PulD, PulS and PulC HR domain.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
SA [auth s]	SCOP2 Family	T2SSC-like	8095544	4005027	SCOP2 (2022-06-29)
SA [auth s]	SCOP2 Superfamily	PilP-like	8095545	3002541	SCOP2 (2022-06-29)
RA [auth r]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	PilP-like	8095545	3002541	SCOP2B (2022-06-29)
Z	SCOP2 Family	PulS-like	8093939	4004461	SCOP2 (2022-06-29)
Z	SCOP2 Superfamily	Pilotin-like	8093940	3002445	SCOP2 (2022-06-29)
Y	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	Pilotin-like	8093940	3002445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
SA [auth s]	SBP_bac_6	e6hcgs1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
RA [auth r]	SBP_bac_6	e6hcgr1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
QA [auth q]	SBP_bac_6	e6hcgq1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
PA [auth p]	SBP_bac_6	e6hcgp1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
OA [auth o]	SBP_bac_6	e6hcgo1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
NA [auth n]	SBP_bac_6	e6hcgn1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
MA [auth m]	SBP_bac_6	e6hcgm1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
LA [auth l]	SBP_bac_6	e6hcgl1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
KA [auth k]	SBP_bac_6	e6hcgk1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
JA [auth j]	SBP_bac_6	e6hcgj1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
IA [auth i]	SBP_bac_6	e6hcgi1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
HA [auth h]	SBP_bac_6	e6hcgh1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
GA [auth g]	SBP_bac_6	e6hcgg1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
FA [auth f]	SBP_bac_6	e6hcgf1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
EA [auth e]	SBP_bac_6	e6hcge1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
Z	SBP_bac_6	e6hcgZ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
Y	SBP_bac_6	e6hcgY1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
X	SBP_bac_6	e6hcgX1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
W	SBP_bac_6	e6hcgW1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
V	SBP_bac_6	e6hcgV1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
U	SBP_bac_6	e6hcgU1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
T	SBP_bac_6	e6hcgT1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
S	SBP_bac_6	e6hcgS1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
R	SBP_bac_6	e6hcgR1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
Q	SBP_bac_6	e6hcgQ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
P	SBP_bac_6	e6hcgP1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
DA [auth d]	SBP_bac_6	e6hcgd1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
CA [auth c]	SBP_bac_6	e6hcgc1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
BA [auth b]	SBP_bac_6	e6hcgb1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
AA [auth a]	SBP_bac_6	e6hcga1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
O	SBP_bac_6	e6hcgO1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
N	SBP_bac_6	e6hcgN1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
M	SBP_bac_6	e6hcgM1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
L	SBP_bac_6	e6hcgL1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
K	SBP_bac_6	e6hcgK1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
J	SBP_bac_6	e6hcgJ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
I	SBP_bac_6	e6hcgI1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
H	SBP_bac_6	e6hcgH1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
G	SBP_bac_6	e6hcgG1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
F	SBP_bac_6	e6hcgF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
E	SBP_bac_6	e6hcgE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
D	SBP_bac_6	e6hcgD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
C	SBP_bac_6	e6hcgC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
B	SBP_bac_6	e6hcgB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)
A	SBP_bac_6	e6hcgA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: SBP_bac_6	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF03958	Bacterial type II/III secretion system short domain (Secretin_N)	Bacterial type II/III secretion system short domain	This is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF00263	Bacterial type II and III secretion system protein (Secretin)	Bacterial type II and III secretion system protein	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	PF21305	GspD-like, N0 domain (type_II_gspD_N0)	GspD-like, N0 domain	GspD is a type II general secretion pathway protein involved in protein export. This is the N0 domain found at the N-terminal of GspD type II secretins and its close homologues [1-5]. These proteins form a dodecameric ring, in which the N0 domain med ...	GspD is a type II general secretion pathway protein involved in protein export. This is the N0 domain found at the N-terminal of GspD type II secretins and its close homologues [1-5]. These proteins form a dodecameric ring, in which the N0 domain mediate extensive contacts suggesting that dodecameric N0 ring is an important feature of T2SS secretins [4]. This domain is also found in virion export proteins, proteins thought to form a channel across the host outer membrane for the purposes of extruding the bacteriophage.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	Pectic enzymes secretion protein OutC	-	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex type II protein secretion system complex
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	Pullulanase	-	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Type II secretion system protein D	identical protein binding protein binding binding	protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein transport across the cell outer membrane establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion by the type II secretion system protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport macromolecule localization cellular process intracellular protein localization	protein-containing complex type II protein secretion system complex cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	IPR001639	Type II secretion system protein GspC	Family
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	IPR024961	Type II secretion system protein GspC, N-terminal	Domain
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	IPR036034	PDZ superfamily	Homologous Superfamily
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	IPR005699	Chaperone lipoprotein, PulS/OutS	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	IPR019114	Chaperone lipoprotein, PulS/OutS-like	Family
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	IPR038432	PulS/OutS-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR050810	Bacterial Secretion System Channel Protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR005644	NolW-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR004846	Type II/III secretion system, secretin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR038591	NolW-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR049371	GspD-like, N0 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR001775	GspD/PilQ family	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR004845	Type II secretion system protein GspD, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR013356	Type II secretion system protein GspD	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	OPM	Transmembrane	Beta-barrel transmembrane	Outer bacterial membrane secretin	Outer bacterial membrane secretion

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type II Secretion Systems	bacterial type II secretion system, core architecture