6HA1

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyTranslational proteins8089142 3000811 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L48080694 3001146 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRL5-like8073858 3001709 SCOP2B (2022-06-29)
H [auth J]SCOP2B SuperfamilyRibosomal protein L138066055 3001134 SCOP2B (2022-06-29)
I [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8072020 3000433 SCOP2B (2022-06-29)
J [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070559 3001045 SCOP2B (2022-06-29)
K [auth M]SCOP2 FamilyRibosomal protein L16p8076038 4003717 SCOP2 (2022-06-29)
K [auth M]SCOP2 SuperfamilyRibosomal protein L16p/L10e8076039 3000884 SCOP2 (2022-06-29)
L [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089014 3000995 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082419 3000334 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyRibosomal protein L208075004 3000563 SCOP2B (2022-06-29)
P [auth R]SCOP2B Superfamilyl21p-like8082437 3002005 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyRibosomal protein L228076724 3001078 SCOP2B (2022-06-29)
R [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077095 3000210 SCOP2B (2022-06-29)
S [auth U]SCOP2 FamilyRibosomal proteins L24p and L21e8082504 4001752 SCOP2 (2022-06-29)
S [auth U]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082505 3000334 SCOP2 (2022-06-29)
T [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8075028 3000539 SCOP2B (2022-06-29)
U [auth X]SCOP2B SuperfamilyL28p-like8089402 3001966 SCOP2B (2022-06-29)
V [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8076730 3000713 SCOP2B (2022-06-29)
W [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076285 3001378 SCOP2B (2022-06-29)
X [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins8081585 3001320 SCOP2B (2022-06-29)
Y [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8075070 3001320 SCOP2B (2022-06-29)
AA [auth 3]SCOP2B SuperfamilyL35p-like8083342 3000790 SCOP2B (2022-06-29)
BA [auth 4]SCOP2 FamilyRibosomal protein L368083303 4003715 SCOP2 (2022-06-29)
BA [auth 4]SCOP2 SuperfamilyRibosomal protein L368083304 3001346 SCOP2 (2022-06-29)
CA [auth 6]SCOP2 FamilyRibosomal protein L31p8086123 4003966 SCOP2 (2022-06-29)
CA [auth 6]SCOP2 SuperfamilyL28p-like8086124 3001966 SCOP2 (2022-06-29)
FA [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063832 3001397 SCOP2B (2022-06-29)
HA [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083390 3001473 SCOP2B (2022-06-29)
JA [auth f]SCOP2B SuperfamilyRibosomal protein S68066497 3001323 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein S78066029 3000799 SCOP2B (2022-06-29)
LA [auth h]SCOP2B SuperfamilyRibosomal protein S88079051 3000709 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082667 3000100 SCOP2B (2022-06-29)
NA [auth j]SCOP2B SuperfamilyRibosomal protein S108098572 3001336 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyTranslational machinery components8098278 3000571 SCOP2B (2022-06-29)
PA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins8098574 3000135 SCOP2B (2022-06-29)
QA [auth m]SCOP2B SuperfamilyS13-like H2TH domain8098564 3000053 SCOP2B (2022-06-29)
RA [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052595 3000068 SCOP2B (2022-06-29)
SA [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8072617 3001284 SCOP2B (2022-06-29)
TA [auth p]SCOP2B SuperfamilyRibosomal protein S168066553 3000680 SCOP2B (2022-06-29)
UA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8059270 3000135 SCOP2B (2022-06-29)
WA [auth s]SCOP2B SuperfamilyRibosomal protein S198086056 3000686 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CRibosomal_L2_1e6ha1C2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
CRibosomal_L2_Ce6ha1C1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
DRibosomal_L3e6ha1D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
ERibosomal_L4e6ha1E1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
FRibosomal_L5_Ce6ha1F1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
GRibosomal_L6e6ha1G1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
GRibosomal_L6_1e6ha1G2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
H [auth J]Ribosomal_L13e6ha1J1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
I [auth K]Ribosomal_L14e6ha1K1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
J [auth L]Ribosomal_L27Ae6ha1L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
K [auth M]Ribosomal_L16e6ha1M1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
L [auth N]Ribosomal_L17_1e6ha1N1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
M [auth O]Ribosomal_L18pe6ha1O1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
N [auth P]Ribosomal_L19e6ha1P1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
O [auth Q]Ribosomal_L20e6ha1Q1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
P [auth R]Ribosomal_L21pe6ha1R1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
Q [auth S]Ribosomal_L22e6ha1S1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
R [auth T]Ribosomal_L23_2e6ha1T1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
S [auth U]ribosomal_L24_1e6ha1U1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
T [auth W]Ribosomal_L27e6ha1W1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
U [auth X]Ribosomal_L28e6ha1X1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
V [auth Y]Ribosomal_L29e6ha1Y1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
W [auth Z]Ribosomal_L30e6ha1Z1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
X [auth 0]Ribosomal_L32pe6ha101 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
Y [auth 1]Ribosomal_L33e6ha111 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
Z [auth 2]Ribosomal_L34e6ha121 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
AA [auth 3]Ribosomal_L35pe6ha131 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
BA [auth 4]Ribosomal_L36e6ha141 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
CA [auth 6]Ribosomal_L31e6ha161 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
FA [auth b]Ribosomal_S2e6ha1b1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
GA [auth c]Ribosomal_S3_Ce6ha1c1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
GA [auth c]KH_2_1e6ha1c2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
HA [auth d]S4e6ha1d1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
IA [auth e]Ribosomal_S5_Ce6ha1e2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
IA [auth e]Ribosomal_S5e6ha1e1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
JA [auth f]Ribosomal_S6e6ha1f1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
KA [auth g]Ribosomal_S7_1e6ha1g1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
LA [auth h]Ribosomal_S8_Ne6ha1h1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
LA [auth h]Ribosomal_S8_Ce6ha1h2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
MA [auth i]Ribosomal_S9e6ha1i1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
NA [auth j]Ribosomal_S10e6ha1j1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
OA [auth k]Ribosomal_S11e6ha1k1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
PA [auth l]Ribosom_S12_S23e6ha1l1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
QA [auth m]Ribosomal_S13_1e6ha1m1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
RA [auth n]Ribosomal_S14e6ha1n1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
SA [auth o]Ribosomal_S15_1e6ha1o1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
TA [auth p]Ribosomal_S16_1e6ha1p1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
UA [auth q]Ribosomal_S17_1e6ha1q1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
VA [auth r]Ribosomal_S18e6ha1r1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
WA [auth s]Ribosomal_S19e6ha1s1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
XA [auth t]Ribosomal_S20pe6ha1t1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
H [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
I [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
J [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
K [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
L [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
M [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
N [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
O [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
P [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Q [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
R [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
S [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
S [auth U]PF00467KOW motif (KOW)KOW motif- Family
T [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
U [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
V [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
W [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
X [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
Y [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
Z [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
AA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
BA [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
CA [auth 6]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
FA [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
GA [auth c]PF07650KH domain (KH_2)KH domain- Domain
GA [auth c]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
HA [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
HA [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
IA [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
IA [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
JA [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
KA [auth g]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LA [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
MA [auth i]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
NA [auth j]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
OA [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PA [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
QA [auth m]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
RA [auth n]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
SA [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
TA [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
UA [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
VA [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
WA [auth s]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
XA [auth t]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S ribosomal RNA---
5S ribosomal RNA---
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
H [auth J]50S ribosomal protein L13
I [auth K]50S ribosomal protein L14
J [auth L]50S ribosomal protein L15
K [auth M]50S ribosomal protein L16
L [auth N]50S ribosomal protein L17
M [auth O]50S ribosomal protein L18
N [auth P]50S ribosomal protein L19
O [auth Q]50S ribosomal protein L20
P [auth R]50S ribosomal protein L21
Q [auth S]50S ribosomal protein L22
R [auth T]50S ribosomal protein L23
S [auth U]50S ribosomal protein L24
T [auth W]50S ribosomal protein L27
U [auth X]50S ribosomal protein L28
V [auth Y]50S ribosomal protein L29
W [auth Z]50S ribosomal protein L30
X [auth 0]50S ribosomal protein L32
Y [auth 1]50S ribosomal protein L33 1
Z [auth 2]50S ribosomal protein L34
AA [auth 3]50S ribosomal protein L35
BA [auth 4]50S ribosomal protein L36
CA [auth 6]50S ribosomal protein L31
DA [auth 7]mRNA---
EA [auth a]16S ribosomal RNA---
FA [auth b]30S ribosomal protein S2
GA [auth c]30S ribosomal protein S3
HA [auth d]30S ribosomal protein S4
IA [auth e]30S ribosomal protein S5
JA [auth f]30S ribosomal protein S6
KA [auth g]30S ribosomal protein S7
LA [auth h]30S ribosomal protein S8
MA [auth i]30S ribosomal protein S9
NA [auth j]30S ribosomal protein S10
OA [auth k]30S ribosomal protein S11
PA [auth l]30S ribosomal protein S12
QA [auth m]30S ribosomal protein S13
RA [auth n]30S ribosomal protein S14
SA [auth o]30S ribosomal protein S15
TA [auth p]30S ribosomal protein S16
UA [auth q]30S ribosomal protein S17
VA [auth r]30S ribosomal protein S18
WA [auth s]30S ribosomal protein S19
XA [auth t]30S ribosomal protein S20
YA [auth x]P-tRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
H [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
H [auth J]IPR005822Large ribosomal subunit protein uL13Family
H [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
I [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
I [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
I [auth K]IPR000218Large ribosomal subunit protein uL14Family
I [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
J [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
J [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
J [auth L]IPR030878Large ribosomal subunit protein uL15Family
J [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
J [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
K [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
K [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
K [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
K [auth M]IPR047873Large ribosomal subunit protein uL16Family
L [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
L [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
L [auth N]IPR000456Large ribosomal subunit protein bL17Family
M [auth O]IPR005484Large ribosomal subunit protein uL18Family
M [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
N [auth P]IPR001857Large ribosomal subunit protein bL19Family
N [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
N [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
N [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
O [auth Q]IPR005813Large ribosomal subunit protein bL20Family
P [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
P [auth R]IPR001787Large ribosomal subunit protein bL21Family
P [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
P [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Q [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
Q [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Q [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Q [auth S]IPR001063Large ribosomal subunit protein uL22Family
Q [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
R [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
R [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
R [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
S [auth U]IPR003256Large ribosomal subunit protein uL24Family
S [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
S [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
S [auth U]IPR005824KOWDomain
S [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
T [auth W]IPR001684Large ribosomal subunit protein bL27Family
T [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
U [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
U [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
U [auth X]IPR026569Large ribosomal subunit protein bL28Family
U [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
V [auth Y]IPR001854Large ribosomal subunit protein uL29Family
V [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
W [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
W [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
W [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
X [auth 0]IPR002677Large ribosomal subunit protein bL32Family
X [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth 0]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
Y [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Y [auth 1]IPR001705Large ribosomal subunit protein bL33Family
Y [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Z [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Z [auth 2]IPR000271Large ribosomal subunit protein bL34Family
AA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
AA [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
AA [auth 3]IPR001706Large ribosomal subunit protein bL35Family
AA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
BA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
BA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
CA [auth 6]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
CA [auth 6]IPR027491Large ribosomal subunit protein bL31 type AFamily
CA [auth 6]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
CA [auth 6]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
FA [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
FA [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
FA [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
FA [auth b]IPR001865Small ribosomal subunit protein uS2Family
GA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
GA [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
GA [auth c]IPR004087K Homology domainDomain
GA [auth c]IPR004044K Homology domain, type 2Domain
GA [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
GA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
GA [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
GA [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
HA [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
HA [auth d]IPR002942RNA-binding S4 domainDomain
HA [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HA [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
HA [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
HA [auth d]IPR022801Small ribosomal subunit protein uS4Family
IA [auth e]IPR000851Small ribosomal subunit protein uS5Family
IA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IA [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IA [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
IA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
JA [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
JA [auth f]IPR000529Small ribosomal subunit protein bS6Family
JA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
JA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
JA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
KA [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
KA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
KA [auth g]IPR000235Small ribosomal subunit protein uS7Family
KA [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
KA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
LA [auth h]IPR000630Small ribosomal subunit protein uS8Family
LA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
LA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
MA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
MA [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
MA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MA [auth i]IPR000754Small ribosomal subunit protein uS9Family
MA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
NA [auth j]IPR001848Small ribosomal subunit protein uS10Family
NA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
NA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
NA [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
OA [auth k]IPR001971Small ribosomal subunit protein uS11Family
OA [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
OA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
OA [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth l]IPR006032Small ribosomal subunit protein uS12Family
PA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
PA [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
QA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
QA [auth m]IPR001892Small ribosomal subunit protein uS13Family
QA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
QA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
QA [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
RA [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
RA [auth n]IPR001209Small ribosomal subunit protein uS14Family
RA [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
RA [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
SA [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
SA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
SA [auth o]IPR000589Small ribosomal subunit protein uS15Family
TA [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
TA [auth p]IPR000307Small ribosomal subunit protein bS16Family
TA [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
UA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
UA [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
UA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
UA [auth q]IPR000266Small ribosomal subunit protein uS17Family
VA [auth r]IPR001648Small ribosomal subunit protein bS18Family
VA [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
VA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
WA [auth s]IPR002222Small ribosomal subunit protein uS19Family
WA [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
WA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
WA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
XA [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
XA [auth t]IPR002583Small ribosomal subunit protein bS20Family