6H6E | pdb_00006h6e

PTC3 holotoxin complex from Photorhabdus luminecens in prepore state (TcdA1, TcdB2, TccC3)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Effector protein SpvB, N-terminal domain-like	8102232	3002724	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PAL-like	8102239	3002726	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	RhsA	e6h6eF2	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: RhsA	ECOD (1.6)
F	SpvB	e6h6eF3	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: SpvB	ECOD (1.6)
F	VCBS	e6h6eF4	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: Propeller domain in ABC toxin B component	F: VCBS	ECOD (1.6)
E	EUF07624	e6h6eE2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07624	ECOD (1.6)
E	EUF07691	e6h6eE4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07691	ECOD (1.6)
E	EUF07697	e6h6eE8	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07697	ECOD (1.6)
E	EUF07706	e6h6eE5	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07706	ECOD (1.6)
E	EUF07707	e6h6eE7	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07707	ECOD (1.6)
E	EUF07856	e6h6eE3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: EUF07856	ECOD (1.6)
E	TcdA_pore	e6h6eE1	A: alpha bundles	X: TcA alpha pore-forming domain (From Topology)	H: TcA alpha pore-forming domain (From Topology)	T: TcA alpha pore-forming domain	F: TcdA_pore	ECOD (1.6)
E	VRP1	e6h6eE6	A: alpha complex topology	X: TcA alpha-helical shell domain (From Topology)	H: TcA alpha-helical shell domain (From Topology)	T: TcA alpha-helical shell domain	F: VRP1	ECOD (1.6)
D	EUF07624	e6h6eD6	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07624	ECOD (1.6)
D	EUF07691	e6h6eD3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07691	ECOD (1.6)
D	EUF07697	e6h6eD8	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07697	ECOD (1.6)
D	EUF07706	e6h6eD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07706	ECOD (1.6)
D	EUF07707	e6h6eD7	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07707	ECOD (1.6)
D	EUF07856	e6h6eD5	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: EUF07856	ECOD (1.6)
D	TcdA_pore	e6h6eD4	A: alpha bundles	X: TcA alpha pore-forming domain (From Topology)	H: TcA alpha pore-forming domain (From Topology)	T: TcA alpha pore-forming domain	F: TcdA_pore	ECOD (1.6)
D	VRP1	e6h6eD1	A: alpha complex topology	X: TcA alpha-helical shell domain (From Topology)	H: TcA alpha-helical shell domain (From Topology)	T: TcA alpha-helical shell domain	F: VRP1	ECOD (1.6)
C	EUF07624	e6h6eC5	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07624	ECOD (1.6)
C	EUF07691	e6h6eC3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07691	ECOD (1.6)
C	EUF07697	e6h6eC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07697	ECOD (1.6)
C	EUF07706	e6h6eC4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07706	ECOD (1.6)
C	EUF07707	e6h6eC6	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07707	ECOD (1.6)
C	EUF07856	e6h6eC7	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: EUF07856	ECOD (1.6)
C	TcdA_pore	e6h6eC8	A: alpha bundles	X: TcA alpha pore-forming domain (From Topology)	H: TcA alpha pore-forming domain (From Topology)	T: TcA alpha pore-forming domain	F: TcdA_pore	ECOD (1.6)
C	VRP1	e6h6eC1	A: alpha complex topology	X: TcA alpha-helical shell domain (From Topology)	H: TcA alpha-helical shell domain (From Topology)	T: TcA alpha-helical shell domain	F: VRP1	ECOD (1.6)
B	EUF07624	e6h6eB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07624	ECOD (1.6)
B	EUF07691	e6h6eB4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07691	ECOD (1.6)
B	EUF07697	e6h6eB5	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07697	ECOD (1.6)
B	EUF07706	e6h6eB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07706	ECOD (1.6)
B	EUF07707	e6h6eB7	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07707	ECOD (1.6)
B	EUF07856	e6h6eB3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: EUF07856	ECOD (1.6)
B	TcdA_pore	e6h6eB8	A: alpha bundles	X: TcA alpha pore-forming domain (From Topology)	H: TcA alpha pore-forming domain (From Topology)	T: TcA alpha pore-forming domain	F: TcdA_pore	ECOD (1.6)
B	VRP1	e6h6eB6	A: alpha complex topology	X: TcA alpha-helical shell domain (From Topology)	H: TcA alpha-helical shell domain (From Topology)	T: TcA alpha-helical shell domain	F: VRP1	ECOD (1.6)
A	EUF07624	e6h6eA6	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: EUF07624	ECOD (1.6)
A	EUF07691	e6h6eA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07691	ECOD (1.6)
A	EUF07697	e6h6eA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07697	ECOD (1.6)
A	EUF07706	e6h6eA5	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07706	ECOD (1.6)
A	EUF07707	e6h6eA7	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: EUF07707	ECOD (1.6)
A	EUF07856	e6h6eA4	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: EUF07856	ECOD (1.6)
A	TcdA_pore	e6h6eA1	A: alpha bundles	X: TcA alpha pore-forming domain (From Topology)	H: TcA alpha pore-forming domain (From Topology)	T: TcA alpha pore-forming domain	F: TcdA_pore	ECOD (1.6)
A	VRP1	e6h6eA8	A: alpha complex topology	X: TcA alpha-helical shell domain (From Topology)	H: TcA alpha-helical shell domain (From Topology)	T: TcA alpha-helical shell domain	F: VRP1	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F	TcdB2,TccC3	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region
A, B, C, D, E	TcdA1	identical protein binding protein binding binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F	IPR050708	Type VI secretion system VgrG/RHS	Family
F	IPR041508	Toxin complex C-like repeat	Repeat
F	IPR022385	Rhs repeat-associated core	Domain
F	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
F	IPR003284	Salmonella virulence plasmid 65kDa B protein	Family
F	IPR022044	Insecticide toxin TcdB middle/C-terminal	Domain
F	IPR022045	Insecticide toxin TcdB middle/N-terminal	Domain
A, B, C, D, E	IPR018003	Insecticidal toxin complex/plasmid virulence protein	Family
A, B, C, D, E	IPR054141	TcdA1, receptor binding domain 2	Domain
A, B, C, D, E	IPR041079	Neuraminidase-like domain	Domain
A, B, C, D, E	IPR040840	Tc toxin complex TcA, C-terminal TcB-binding domain	Domain
A, B, C, D, E	IPR046839	ABC toxin, N-terminal domain	Domain
A, B, C, D, E	IPR041568	TcA receptor binding domain	Domain
A, B, C, D, E	IPR054144	TcdA1, receptor binding domain 1	Domain