6H01 | pdb_00006h01

Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6h01b1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	Green fluorescent protein, GFP	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
B	d6h01b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
C	d6h01c1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	Green fluorescent protein, GFP	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
C	d6h01c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
D	d6h01d1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	Green fluorescent protein, GFP	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
D	d6h01d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
A	d6h01a1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	Green fluorescent protein, GFP	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)
A	d6h01a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Jellyfish (Aequorea victoria ) [TaxId: 6100 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8101183	3000576	SCOP2B (2022-06-29)
D	SCOP2 Family	Fluorescent proteins	8101182	4001049	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	GFP-like	8101183	3000576	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	AAA_31	e6h01B1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
C	AAA_31	e6h01C1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
D	AAA_31	e6h01D1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
A	PAP_assoc	e6h01A1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: PAP_assoc	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	6.20.160.10	Special	Other non-globular	HSP40/DNAj peptide-binding domain		CATH (utative)
C	6.20.160.10	Special	Other non-globular	HSP40/DNAj peptide-binding domain		CATH (utative)
A	6.20.160.10	Special	Other non-globular	HSP40/DNAj peptide-binding domain		CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Green fluorescent protein	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000786	Green fluorescent protein, GFP	Family
A, B, C, D	IPR011584	Green fluorescent protein-related	Family
A, B, C, D	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.