6GSI

Feline Calicivirus Strain F9 bound to a soluble ectodomain fragment of feline junctional adhesion molecule A - leading to assembly of a portal structure at a unique three-fold axis.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe6gsiA2 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: F_UNCLASSIFIEDECOD (1.6)
APF00915e6gsiA1 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: PF00915ECOD (1.6)
APF00915e6gsiA3 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00915ECOD (1.6)
BF_UNCLASSIFIEDe6gsiB3 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: F_UNCLASSIFIEDECOD (1.6)
BPF00915e6gsiB1 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: PF00915ECOD (1.6)
BPF00915e6gsiB2 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00915ECOD (1.6)
CF_UNCLASSIFIEDe6gsiC3 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: F_UNCLASSIFIEDECOD (1.6)
CPF00915e6gsiC2 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: PF00915ECOD (1.6)
CPF00915e6gsiC1 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00915ECOD (1.6)
DF_UNCLASSIFIEDe6gsiD1 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: F_UNCLASSIFIEDECOD (1.6)
DPF00915e6gsiD2 A: beta barrelsX: cradle loop barrelH: Capsid protein protrusion (P) domain (From Topology)T: Capsid protein protrusion (P) domainF: PF00915ECOD (1.6)
DPF00915e6gsiD3 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00915ECOD (1.6)
EPF07686e6gsiE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
EPF13927e6gsiE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF13927ECOD (1.6)
FPF07686e6gsiF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
FPF13927e6gsiF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF13927ECOD (1.6)
GPF07686e6gsiG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
GPF13927e6gsiG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF13927ECOD (1.6)
HPF07686e6gsiH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
HPF13927e6gsiH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF13927ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
E2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00915Calicivirus coat protein (Calici_coat)Calicivirus coat protein- Family
E, F, G, H
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
E, F, G, H
PF13927Immunoglobulin domain (Ig_3)Immunoglobulin domainThis family contains immunoglobulin-like domains.Domain
I, J, K, L
PF05332Vesivirus VP2 protein (Vesi_VP2)Vesivirus VP2 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
Capsid protein- -
E, F, G, H
Junctional adhesion molecule A-
I, J, K, L
VP2- -