6GND
Crystal structure of the complex of a Ferredoxin-Flavin Thioredoxin Reductase and a Thioredoxin from Clostridium acetobutylicum at 2.9 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6gndb_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | automated matches | automated matches | (Clostridium acetobutylicum ATCC 824 ) [TaxId: 272562 ], | SCOPe (2.08) |
D | d6gndd_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | automated matches | automated matches | (Clostridium acetobutylicum ATCC 824 ) [TaxId: 272562 ], | SCOPe (2.08) |
F | d6gndf_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | automated matches | automated matches | (Clostridium acetobutylicum ATCC 824 ) [TaxId: 272562 ], | SCOPe (2.08) |
H | d6gndh_ | Alpha and beta proteins (a/b) | Thioredoxin fold | Thioredoxin-like | automated matches | automated matches | (Clostridium acetobutylicum ATCC 824 ) [TaxId: 272562 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pyr_redox_2 | e6gndA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
A | UNK_F_TYPE | e6gndA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: UNK_F_TYPE | ECOD (1.6) |
C | Pyr_redox_2 | e6gndC1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
C | UNK_F_TYPE | e6gndC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: UNK_F_TYPE | ECOD (1.6) |
E | Pyr_redox_2 | e6gndE1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
E | UNK_F_TYPE | e6gndE2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: UNK_F_TYPE | ECOD (1.6) |
G | Pyr_redox_2 | e6gndG1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Pyr_redox_2 | ECOD (1.6) |
G | UNK_F_TYPE | e6gndG2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: UNK_F_TYPE | ECOD (1.6) |
B | Thioredoxin | e6gndB1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
D | Thioredoxin | e6gndD1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
F | Thioredoxin | e6gndF1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
H | Thioredoxin | e6gndH1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: Thioredoxin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (utative) |
C | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (utative) |
E | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (utative) |
G | 3.50.50.60 | Alpha Beta | 3-Layer(bba) Sandwich | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | CATH (utative) |
B | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (utative) |
D | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (utative) |
F | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (utative) |
H | 3.40.30.10 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Glutaredoxin | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07992 | Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2) | Pyridine nucleotide-disulphide oxidoreductase | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023753 | FAD/NAD(P)-binding domain | Domain | |
IPR050097 | Ferredoxin--NADP reductase type 2 | Family | |
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR017937 | Thioredoxin, conserved site | Conserved Site | |
IPR013766 | Thioredoxin domain | Domain | |
IPR005746 | Thioredoxin | Family | |
IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily |