Annotations: 6GL7

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth A]	SCOP2B Superfamily	Cystine-knot cytokines	8084510	3000846	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Cystine-knot cytokines	8084510	3000846	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth E]	Bystin	e6gl7E1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (develop294)
E [auth F]	Bystin	e6gl7F1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (develop294)
D [auth C]	Bystin	e6gl7C1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (develop294)
B [auth D]	Bystin	e6gl7D1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (develop294)
C [auth A]	Bystin	e6gl7A1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (develop294)
A [auth B]	Bystin	e6gl7B1	A: alpha bundles	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Bystin	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth F], F [auth E]	PF00028	Cadherin domain (Cadherin)	Cadherin domain		Domain
E [auth F], F [auth E]	PF17813	RET Cadherin like domain 4 (RET_CLD4)	RET Cadherin like domain 4	RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that the ligand-binding RET ectodomain (RET-ECD) contains four consecutive cadherin-like d ...	RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that the ligand-binding RET ectodomain (RET-ECD) contains four consecutive cadherin-like domains (CLD1-CLD4) followed by a membrane-proximal cysteine-rich domain (CRD). This entry relates to CLD4 which is required for CRD folding [1].	Domain
E [auth F], F [auth E]	PF17756	RET Cadherin like domain 1 (RET_CLD1)	RET Cadherin like domain 1	RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that RET contains four consecutive cadherin-like domains (CLD). This entry relates to the ...	RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that RET contains four consecutive cadherin-like domains (CLD). This entry relates to the first CLD at the N-terminal. Several regions within RET-CLD1 have been shown to be important for ligand-coreceptor binding. CLD1 and CLD2 have a distinctive clamshell shape and CLD1 is essential for CLD2 folding. CLD1 contains 2 sites for GDNF receptor alpha 1 binding [1].	Domain
E [auth F], F [auth E]	PF17812	RET Cadherin like domain 3 (RET_CLD3)	RET Cadherin like domain 3	RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that RET contains four consecutive cadherin-like domains (CLD). This entry relates to CLD3 ...	RET is a single transmembrane-spanning receptor tyrosine kinase (RTK) that plays critical roles in the development of vertebrates. Structural analysis indicate that RET contains four consecutive cadherin-like domains (CLD). This entry relates to CLD3. Classical cadherin calcium-coordinating motifs can be found between CLD2 and CLD3 [1].	Domain
B [auth D], D [auth C]	PF02351	GDNF/GAS1 domain (GDNF)	GDNF/GAS1 domain	This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal surv ...	This cysteine rich domain is found in multiple copies in GNDF and GAS1 proteins. GDNF and neurturin (NTN) receptors are potent survival factors for sympathetic, sensory and central nervous system neurons [2]. GDNF and neurturin promote neuronal survival by signaling through similar multicomponent receptors that consist of a common receptor tyrosine kinase and a member of a GPI-linked family of receptors that determines ligand specificity [3].	Domain
A [auth B], C [auth A]	PF00019	Transforming growth factor beta like domain (TGF_beta)	Transforming growth factor beta like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth F], F [auth E]	Proto-oncogene tyrosine-protein kinase receptor Ret	molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity binding molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding calcium ion binding metal ion binding	regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process multicellular organismal process morphogenesis of embryonic epithelium embryonic epithelial tube formation epithelium development tube development embryonic morphogenesis morphogenesis of an epithelium regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process multicellular organismal process morphogenesis of embryonic epithelium embryonic epithelial tube formation epithelium development tube development embryonic morphogenesis morphogenesis of an epithelium tube formation tissue development embryo development epithelial tube formation tissue morphogenesis anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure development anatomical structure formation involved in morphogenesis epithelial tube morphogenesis cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling GDF15-GFRAL signaling pathway cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to stress response to stress glial cell-derived neurotrophic factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway positive regulation of cell communication positive regulation of signal transduction signal transduction in absence of ligand positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of extrinsic apoptotic signaling pathway in absence of ligand extrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of response to stimulus extrinsic apoptotic signaling pathway in absence of ligand positive regulation of cellular process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process positive regulation of extrinsic apoptotic signaling pathway cell death positive regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway in absence of ligand regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway positive regulation of signaling regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of metanephric glomerulus development regulation of developmental process metanephric glomerulus development regulation of kidney development renal system development positive regulation of developmental process metanephros development regulation of glomerulus development regulation of multicellular organismal process nephron development metanephric nephron development system development regulation of metanephric glomerulus development animal organ development positive regulation of glomerulus development positive regulation of kidney development glomerulus development positive regulation of multicellular organismal process regulation of metanephros development kidney development positive regulation of metanephros development proteolysis membrane protein proteolysis primary metabolic process protein metabolic process response to lipid response to oxygen-containing compound cellular response to oxygen-containing compound response to retinoic acid cellular response to chemical stimulus cellular response to retinoic acid response to chemical cellular response to lipid ureter development developmental maturation ureter maturation anatomical structure maturation animal organ maturation intracellular signal transduction intracellular signaling cassette MAPK cascade regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process cell projection organization cell development neuron projection development cellular component organization neurogenesis neuron differentiation positive regulation of neuron projection development cell differentiation positive regulation of cell projection organization cellular component organization or biogenesis plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization cell-cell adhesion neuron cell-cell adhesion leukocyte migration lymphocyte migration into lymphoid organs immune system process mononuclear cell migration lymphocyte migration cell migration cell motility homophilic cell-cell adhesion multicellular organismal response to stress response to pain immune system development hematopoietic or lymphoid organ development Peyer's patch morphogenesis Peyer's patch development mucosa-associated lymphoid tissue development axonogenesis plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis regulation of axonogenesis regulation of anatomical structure morphogenesis axon development cell morphogenesis involved in neuron differentiation neuron maturation cell maturation digestive system development posterior midgut development midgut development digestive tract development regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of intracellular signal transduction positive regulation of intracellular signal transduction positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction stem cell development neural crest cell differentiation neural crest cell development mesenchyme development mesenchymal cell migration stem cell differentiation ameboidal-type cell migration mesenchymal cell differentiation neural crest cell migration positive regulation of cell adhesion mediated by integrin positive regulation of cell adhesion regulation of cell adhesion mediated by integrin cell adhesion mediated by integrin ureteric bud development mesonephric epithelium development kidney epithelium development mesonephros development mesonephric tubule development positive regulation of MAPK cascade regulation of MAPK cascade axon guidance neuron projection guidance positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion positive regulation of DNA-templated transcription RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription enteric nervous system development autonomic nervous system development positive regulation of cell size regulation of cellular component size regulation of biological quality regulation of cell size regulation of anatomical structure size	protein-containing complex receptor complex cell periphery cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex endosome membrane membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle protein-containing complex receptor complex cell periphery cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex endosome membrane membrane-bounded organelle intracellular anatomical structure endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane axon cell projection neuron projection plasma membrane bounded cell projection
B [auth D], D [auth C]	GDNF family receptor alpha-2	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity cytokine receptor activity immune receptor activity glial cell-derived neurotrophic factor receptor activity glycosaminoglycan binding organic acid binding binding ion binding heparan sulfate binding anion binding carboxylic acid binding carbohydrate derivative binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity cytokine receptor activity immune receptor activity glial cell-derived neurotrophic factor receptor activity glycosaminoglycan binding organic acid binding binding ion binding heparan sulfate binding anion binding carboxylic acid binding carbohydrate derivative binding small molecule binding sulfur compound binding	developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular process signal transduction enzyme-linked receptor protein signaling pathway glial cell-derived neurotrophic factor receptor signaling pathway	protein-containing complex receptor complex cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extrinsic component of membrane
A [auth B], C [auth A]	Neurturin	protein binding binding signaling receptor binding growth factor receptor binding glial cell-derived neurotrophic factor receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding protein binding binding signaling receptor binding growth factor receptor binding glial cell-derived neurotrophic factor receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity protein tyrosine kinase binding kinase binding receptor tyrosine kinase binding enzyme binding protein kinase binding glycosaminoglycan binding organic acid binding ion binding heparan sulfate binding anion binding carboxylic acid binding carbohydrate derivative binding small molecule binding sulfur compound binding	developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway developmental process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular process signal transduction enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway via STAT glial cell-derived neurotrophic factor receptor signaling pathway nerve development stem cell development neural crest cell differentiation cellular developmental process animal organ development neural crest cell development cell development mesenchyme development tissue development mesenchymal cell migration stem cell differentiation cell differentiation ameboidal-type cell migration cell migration mesenchymal cell differentiation cell motility neural crest cell migration plasma membrane bounded cell projection organization cell projection organization neuron projection development cellular component organization generation of neurons neurogenesis neuron differentiation neuron development cellular component organization or biogenesis intracellular signal transduction intracellular signaling cassette MAPK cascade	cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth F], F [auth E]	IPR008266	Tyrosine-protein kinase, active site	Active Site
E [auth F], F [auth E]	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
E [auth F], F [auth E]	IPR015919	Cadherin-like superfamily	Homologous Superfamily
E [auth F], F [auth E]	IPR041317	RET, cadherin-like domain 4	Domain
E [auth F], F [auth E]	IPR016249	Tyrosine-protein kinase, Ret receptor	Family
E [auth F], F [auth E]	IPR000719	Protein kinase domain	Domain
E [auth F], F [auth E]	IPR041163	Ret, cadherin like domain 1	Domain
E [auth F], F [auth E]	IPR002126	Cadherin-like	Domain
E [auth F], F [auth E]	IPR017441	Protein kinase, ATP binding site	Binding Site
E [auth F], F [auth E]	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
E [auth F], F [auth E]	IPR040667	Tyrosine-protein kinase receptor Ret, cadherin like domain 3	Domain
E [auth F], F [auth E]	IPR055162	RET, cysteine rich domain	Domain
E [auth F], F [auth E]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
E [auth F], F [auth E]	IPR050122	Receptor Tyrosine Kinase	Family
B [auth D], D [auth C]	IPR037193	GDNF receptor alpha	Homologous Superfamily
B [auth D], D [auth C]	IPR003504	Glial cell line-derived neurotrophic factor receptor alpha 2	Family
B [auth D], D [auth C]	IPR017372	Glial cell line-derived neurotrophic factor receptor, alpha 1/2	Family
B [auth D], D [auth C]	IPR003438	Glial cell line-derived neurotrophic factor receptor	Family
B [auth D], D [auth C]	IPR016017	GDNF/GAS1	Domain
A [auth B], C [auth A]	IPR043401	Glial cell line-derived neurotrophic factor family	Family
A [auth B], C [auth A]	IPR029034	Cystine-knot cytokine	Homologous Superfamily
A [auth B], C [auth A]	IPR001839	Transforming growth factor-beta, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth F], F [auth E]	Pharos: P07949	Hirschsprung disease multiple endocrine neoplasia type 2A multiple endocrine neoplasia type 2B medullary thyroid gland carcinoma phaeochromocytoma congenital central hypoventilation syndrome multiple endocrine neoplasia familial medullary thyroid carcinoma Hirschsprung disease, susceptibility to, 1 status epilepticus Burkitt lymphoma colorectal cancer cancer thyroid gland papillary carcinoma thyroid adenoma Hirschsprung disease multiple endocrine neoplasia type 2A multiple endocrine neoplasia type 2B medullary thyroid gland carcinoma phaeochromocytoma congenital central hypoventilation syndrome multiple endocrine neoplasia familial medullary thyroid carcinoma Hirschsprung disease, susceptibility to, 1 status epilepticus Burkitt lymphoma colorectal cancer cancer thyroid gland papillary carcinoma thyroid adenoma thyroid gland carcinoma non-small cell lung carcinoma Pheochromocytoma thyroid cancer paraganglioma medulloblastoma colorectal carcinoma endometrial carcinoma adenoma ovarian cancer hereditary amyloidosis atypical teratoid rhabdoid tumor pituitary cancer bladder transitional cell carcinoma large cell medulloblastoma renal cell carcinoma breast carcinoma malignant ependymoma colorectal adenocarcinoma melanoma extra-adrenal sympathetic paraganglioma adrenal gland pheochromocytoma familial nonmedullary thyroid carcinoma Haddad syndrome benign neoplasm of adrenal gland intellectual disability psoriasis renal hypodysplasia/aplasia 1 bowel dysfunction lung cancer malignant glioma thyroid gland follicular carcinoma cutaneous melanoma neuroendocrine carcinoma osteosarcoma adrenal medulla cancer gastrointestinal stromal tumor hepatocellular carcinoma astrocytic tumor intestinal disease renal agenesis, unilateral breast cancer lung disease thymic carcinoma
B [auth D], D [auth C]	Pharos: O00451	atypical teratoid rhabdoid tumor invasive ductal breast carcinoma medulloblastoma primitive neuroectodermal tumor exocrine pancreatic carcinoma large cell medulloblastoma pilocytic astrocytoma schizophrenia glioblastoma malignant glioma pituitary cancer
A [auth B], C [auth A]	Pharos: Q99748	Hirschsprung disease age-related macular degeneration bowel dysfunction gastric carcinoma intestinal disease pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atopic eczema cholelithiasis pancreatic intraductal papillary-mucinous carcinoma spina bifida bipolar disorder gallbladder disease Hirschsprung disease, susceptibility to, 1 pancreatic intraductal papillary-mucinous neoplasm wet macular degeneration