6GHD
Structural analysis of the ternary complex between lamin A/C, BAF and emerin identifies an interface disrupted in autosomal recessive progeroid diseases
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth G] | SCOP2B Superfamily | LEM domain | 8043401 | 3001900 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | LEM domain | 8043401 | 3001900 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Barrier-to-autointegration factor, BAF | 8037724 | 3000540 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Barrier-to-autointegration factor, BAF | 8037724 | 3000540 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Barrier-to-autointegration factor, BAF | 8037724 | 3000540 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | Barrier-to-autointegration factor, BAF | 8037724 | 3000540 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Lamin A/C globular tail domain | 8055285 | 3002064 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Lamin A/C globular tail domain | 8055285 | 3002064 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | LEM | e6ghdG1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: LEM | ECOD (1.6) |
H | LEM | e6ghdH1 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: LEM | ECOD (1.6) |
B [auth D] | BAF | e6ghdD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: BAF | ECOD (1.6) |
D [auth E] | BAF | e6ghdE1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: BAF | ECOD (1.6) |
E [auth A] | BAF | e6ghdA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: BAF | ECOD (1.6) |
F [auth C] | BAF | e6ghdC1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: BAF | ECOD (1.6) |
C [auth B] | LTD | e6ghdB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LTD | ECOD (1.6) |
G [auth F] | LTD | e6ghdF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: LTD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth G] | 1.10.720.40 | Mainly Alpha | Orthogonal Bundle | Transcription Termination Factor Rho, Rna-binding Domain | Chain A, Domain 1 | CATH (4.3.0) |
H | 1.10.720.40 | Mainly Alpha | Orthogonal Bundle | Transcription Termination Factor Rho, Rna-binding Domain | Chain A, Domain 1 | CATH (4.3.0) |
B [auth D] | 1.10.150.40 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
D [auth E] | 1.10.150.40 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
E [auth A] | 1.10.150.40 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
F [auth C] | 1.10.150.40 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
C [auth B] | 2.60.40.1260 | Mainly Beta | Sandwich | Immunoglobulin-like | Lamin Tail domain | CATH (4.3.0) |
G [auth F] | 2.60.40.1260 | Mainly Beta | Sandwich | Immunoglobulin-like | Lamin Tail domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G], H | PF03020 | LEM domain (LEM) | LEM domain | The LEM domain is 50 residues long and is composed of two parallel alpha helices. This domain is found in inner nuclear membrane proteins. It is called the LEM domain after LAP2 Swiss:Q62733, Emerin Swiss:P50402 and Man1. | Domain |
B [auth D], D [auth E], E [auth A], F [auth C] | PF02961 | Barrier to autointegration factor (BAF) | Barrier to autointegration factor | The BAF protein has a SAM-domain-like bundle of orthogonally packed alpha-hairpins - one classic and one pseudo helix-hairpin-helix motif. The protein is involved in the prevention of retroviral DNA integration. | Domain |
C [auth B], G [auth F] | PF00932 | Lamin Tail Domain (LTD) | Lamin Tail Domain | The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth G], H | IPR003887 | LEM domain | Domain |
A [auth G], H | IPR035004 | Emerin | Family |
A [auth G], H | IPR011015 | LEM/LEM-like domain superfamily | Homologous Superfamily |
A [auth G], H | IPR034989 | Emerin, LEM domain | Domain |
B [auth D], D [auth E], E [auth A], F [auth C] | IPR051387 | Barrier-to-autointegration factor | Family |
B [auth D], D [auth E], E [auth A], F [auth C] | IPR004122 | Barrier- to-autointegration factor, BAF | Family |
B [auth D], D [auth E], E [auth A], F [auth C] | IPR036617 | Barrier-to-autointegration factor, BAF superfamily | Homologous Superfamily |
C [auth B], G [auth F] | IPR018039 | Intermediate filament protein, conserved site | Conserved Site |
C [auth B], G [auth F] | IPR036415 | Lamin tail domain superfamily | Homologous Superfamily |
C [auth B], G [auth F] | IPR039008 | Intermediate filament, rod domain | Domain |
C [auth B], G [auth F] | IPR001322 | Lamin tail domain | Domain |