6GC7 | pdb_00006gc7

50S ribosomal subunit assembly intermediate state 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
M [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
I [auth Q]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
G [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
E [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
Q [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
O [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
N [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
L [auth T]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
K [auth S]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
J [auth R]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth P]Ribosomal_L19e6gc7P1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
M [auth U]ribosomal_L24_1e6gc7U1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
I [auth Q]Ribosomal_L20e6gc7Q1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
G [auth N]Ribosomal_L17_1e6gc7N1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
F [auth L]Ribosomal_L27Ae6gc7L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
E [auth K]Ribosomal_L14e6gc7K1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
D [auth J]Ribosomal_L13e6gc7J1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
C [auth E]Ribosomal_L4e6gc7E1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
B [auth D]Ribosomal_L3e6gc7D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
Q [auth Z]Ribosomal_L30e6gc7Z1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
P [auth 2]Ribosomal_L34e6gc721 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
O [auth 0]Ribosomal_L32pe6gc701 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
N [auth Y]Ribosomal_L29e6gc7Y1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
L [auth T]Ribosomal_L23_2e6gc7T1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
K [auth S]Ribosomal_L22e6gc7S1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
J [auth R]Ribosomal_L21pe6gc7R1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
M [auth U]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
M [auth U]PF00467KOW motif (KOW)KOW motif- Family
I [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
G [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
F [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
E [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
D [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
C [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
B [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
Q [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
P [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
O [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
N [auth Y]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
L [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
K [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
J [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth P]50S ribosomal protein L19
M [auth U]50S ribosomal protein L24
I [auth Q]50S ribosomal protein L20
G [auth N]50S ribosomal protein L17
F [auth L]50S ribosomal protein L15
E [auth K]50S ribosomal protein L14
D [auth J]50S ribosomal protein L13
C [auth E]50S ribosomal protein L4
B [auth D]50S ribosomal protein L3
Q [auth Z]50S ribosomal protein L30
P [auth 2]50S ribosomal protein L34
O [auth 0]50S ribosomal protein L32
N [auth Y]50S ribosomal protein L29
L [auth T]50S ribosomal protein L23
K [auth S]50S ribosomal protein L22
J [auth R]50S ribosomal protein L21
23S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth P]IPR001857Large ribosomal subunit protein bL19Family
H [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
H [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
H [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth U]IPR003256Large ribosomal subunit protein uL24Family
M [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
M [auth U]IPR005824KOWDomain
M [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
I [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
I [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
I [auth Q]IPR005813Large ribosomal subunit protein bL20Family
G [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
G [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
G [auth N]IPR000456Large ribosomal subunit protein bL17Family
F [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
F [auth L]IPR030878Large ribosomal subunit protein uL15Family
F [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
F [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
F [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
E [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
E [auth K]IPR000218Large ribosomal subunit protein uL14Family
E [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
E [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
D [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
D [auth J]IPR005822Large ribosomal subunit protein uL13Family
D [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
D [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
C [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth E]IPR002136Large ribosomal subunit protein uL4Family
C [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
B [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
B [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
B [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth D]IPR000597Large ribosomal subunit protein uL3Family
Q [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Q [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
Q [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Q [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
P [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
P [auth 2]IPR000271Large ribosomal subunit protein bL34Family
O [auth 0]IPR002677Large ribosomal subunit protein bL32Family
O [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth 0]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
N [auth Y]IPR050063Universal ribosomal protein uL29Family
N [auth Y]IPR001854Large ribosomal subunit protein uL29Family
N [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
N [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
L [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
L [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
L [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
K [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
K [auth S]IPR001063Large ribosomal subunit protein uL22Family
K [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
K [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
K [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
J [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
J [auth R]IPR001787Large ribosomal subunit protein bL21Family
J [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
J [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site