6G63
RNase E in complex with sRNA RrpA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039601 | 3000135 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8102249 | 3000100 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | MK0968-like | 8102253 | 3002481 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DnaJ/Hsp40 cysteine-rich domain-like | 8102255 | 3001550 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Type III KH-domain | 8102257 | 3002727 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8102249 | 3000100 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | MK0968-like | 8102253 | 3002481 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039601 | 3000135 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | DnaJ/Hsp40 cysteine-rich domain-like | 8102255 | 3001550 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Type III KH-domain | 8102257 | 3002727 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | Type III KH-domain | 8102257 | 3002727 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | DnaJ/Hsp40 cysteine-rich domain-like | 8102255 | 3001550 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039601 | 3000135 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8102249 | 3000100 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | MK0968-like | 8102253 | 3002481 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8102249 | 3000100 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | MK0968-like | 8102253 | 3002481 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | DnaJ/Hsp40 cysteine-rich domain-like | 8102255 | 3001550 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | Type III KH-domain | 8102257 | 3002727 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039601 | 3000135 | SCOP2B (2022-06-29) |
D [auth N] | SCOP2B Superfamily | Ribonuclease H-like | 8102251 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00575 | e6g63A2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
A | PF10150 | e6g63A3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF10150 | ECOD (1.6) |
A | PF20833 | e6g63A5 | A: a+b three layers | X: Thioredoxin-like domain in RNase E (From Topology) | H: Thioredoxin-like domain in RNase E (From Topology) | T: Thioredoxin-like domain in RNase E | F: PF20833 | ECOD (1.6) |
A | PF10150 | e6g63A4 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF10150 | ECOD (1.6) |
A | PF10150 | e6g63A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF10150 | ECOD (1.6) |
B [auth G] | PF00575 | e6g63G2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
B [auth G] | PF10150 | e6g63G3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF10150 | ECOD (1.6) |
B [auth G] | PF20833 | e6g63G5 | A: a+b three layers | X: Thioredoxin-like domain in RNase E (From Topology) | H: Thioredoxin-like domain in RNase E (From Topology) | T: Thioredoxin-like domain in RNase E | F: PF20833 | ECOD (1.6) |
B [auth G] | PF10150 | e6g63G1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF10150 | ECOD (1.6) |
B [auth G] | PF10150 | e6g63G4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF10150 | ECOD (1.6) |
C [auth L] | PF00575 | e6g63L2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
C [auth L] | PF10150 | e6g63L4 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF10150 | ECOD (1.6) |
C [auth L] | PF20833 | e6g63L3 | A: a+b three layers | X: Thioredoxin-like domain in RNase E (From Topology) | H: Thioredoxin-like domain in RNase E (From Topology) | T: Thioredoxin-like domain in RNase E | F: PF20833 | ECOD (1.6) |
C [auth L] | PF10150 | e6g63L1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF10150 | ECOD (1.6) |
C [auth L] | PF10150 | e6g63L5 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF10150 | ECOD (1.6) |
D [auth N] | PF00575 | e6g63N3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
D [auth N] | PF10150 | e6g63N1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF10150 | ECOD (1.6) |
D [auth N] | PF20833 | e6g63N4 | A: a+b three layers | X: Thioredoxin-like domain in RNase E (From Topology) | H: Thioredoxin-like domain in RNase E (From Topology) | T: Thioredoxin-like domain in RNase E | F: PF20833 | ECOD (1.6) |
D [auth N] | PF10150 | e6g63N5 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: DNase I-like (From Topology) | T: DNase I-like | F: PF10150 | ECOD (1.6) |
D [auth N] | PF10150 | e6g63N2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF10150 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth L] | 3.40.1260.20 | Alpha Beta | 3-Layer(aba) Sandwich | Hypothetical Protein Ychn | Chain: A, | CATH (4.3.0) |
D [auth N] | 3.40.1260.20 | Alpha Beta | 3-Layer(aba) Sandwich | Hypothetical Protein Ychn | Chain: A, | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth G], C [auth L], D [auth N] | PF20833 | RNase E/G, Thioredoxin-like domain (RNase_E_G_Thio) | RNase E/G, Thioredoxin-like domain | Both RNase E and its homologue RNase G are endoribonucleases that play central roles in RNA processing. RNase E shows two globular domains. This entry represents the smaller domain, which shows a thioredoxin-like fold [1-3]. | Domain |
A, B [auth G], C [auth L], D [auth N] | PF10150 | Ribonuclease E/G family (RNase_E_G) | Ribonuclease E/G family | - | Family |
A, B [auth G], C [auth L], D [auth N] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |