6FRI | pdb_00006fri

Structure of LuxB from Photobacterium leiognathi

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6frid_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	Bacterial luciferase (alkanal monooxygenase)	automated matches	(Photobacterium leiognathi ) [TaxId: 553611 ],	SCOPe (2.08)
C	d6fric_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	Bacterial luciferase (alkanal monooxygenase)	automated matches	(Photobacterium leiognathi ) [TaxId: 553611 ],	SCOPe (2.08)
B	d6frib_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	Bacterial luciferase (alkanal monooxygenase)	automated matches	(Photobacterium leiognathi ) [TaxId: 553611 ],	SCOPe (2.08)
A	d6fria_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Bacterial luciferase-like	Bacterial luciferase (alkanal monooxygenase)	automated matches	(Photobacterium leiognathi ) [TaxId: 553611 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Bacterial luciferase-like	8073437	3000585	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bacterial luciferase-like	8073437	3000585	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bacterial luciferase-like	8073437	3000585	SCOP2B (2022-06-29)
A	SCOP2 Family	Bacterial luciferase (alkanal monooxygenase)	8073436	4003312	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bacterial luciferase-like	8073437	3000585	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e6friD1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F:	ECOD (v294.1)
C		e6friC1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F:	ECOD (v294.1)
B		e6friB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F:	ECOD (v294.1)
A	NMT	e6friA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: NMT	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)
C	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)
B	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)
A	3.20.20.30	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Luciferase-like domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Alkanal monooxygenase beta chain	oxidoreductase activity monooxygenase activity alkanal monooxygenase (FMN-linked) activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen catalytic activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	bioluminescence metabolic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR050766	Bacterial Luciferase Oxidoreductase	Family
A, B, C, D	IPR011251	Luciferase-like domain	Domain
A, B, C, D	IPR002103	Bacterial luciferase/NFP	Family
A, B, C, D	IPR033924	Alkanal monooxygenase	Family
A, B, C, D	IPR018235	Bacterial luciferase, conserved site	Conserved Site
A, B, C, D	IPR036661	Luciferase-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.