6FCO | pdb_00006fco

Structural and functional characterisation of Frataxin (FXN) like protein from Chaetomium thermophilum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Frataxin/Nqo15-like	8079449	3001840	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Frataxin/Nqo15-like	8079449	3001840	SCOP2B (2022-06-29)
C	SCOP2 Family	Frataxin-like	8079448	4001566	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Frataxin/Nqo15-like	8079449	3001840	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Frataxin/Nqo15-like	8079449	3001840	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Frataxin/Nqo15-like	8079449	3001840	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Frataxin/Nqo15-like	8079449	3001840	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Frataxin_Cyay	e6fcoA1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: Frataxin_Cyay	ECOD (1.6)
B	Frataxin_Cyay	e6fcoB1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: Frataxin_Cyay	ECOD (1.6)
C	Frataxin_Cyay	e6fcoC1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: Frataxin_Cyay	ECOD (1.6)
D	Frataxin_Cyay	e6fcoD1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: Frataxin_Cyay	ECOD (1.6)
E	Frataxin_Cyay	e6fcoE1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: Frataxin_Cyay	ECOD (1.6)
F	Frataxin_Cyay	e6fcoF1	A: a+b two layers	X: Type III secretory system chaperone-like	H: Frataxin-like (From Topology)	T: Frataxin-like	F: Frataxin_Cyay	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
B	3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
C	3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
D	3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
E	3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)
F	3.30.920.10	Alpha Beta	2-Layer Sandwich	Metal Transport, Frataxin	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01491	Frataxin-like domain (Frataxin_Cyay)	Frataxin-like domain	This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is current ...	This family contains proteins that have a domain related to the globular C-terminus of Frataxin the protein that is mutated in Friedreich's ataxia. This domain is found in a family of bacterial proteins. The function of this domain is currently unknown. It has been suggested that this family is involved in iron transport.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Mitochondrial frataxin-like protein	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding ferric iron binding metallochaperone activity iron chaperone activity cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding ferric iron binding metallochaperone activity iron chaperone activity molecular carrier activity oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport cellular component biogenesis cellular component organization metallo-sulfur cluster assembly cellular component assembly iron-sulfur cluster assembly cellular process cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR020895	Frataxin conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR017789	Frataxin	Family
A, B, C, D, E A, B, C, D, E, F	IPR036524	Frataxin/CyaY superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002908	Frataxin/CyaY	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.