6F7K | pdb_00006f7k

Crystal structure of Dettilon tailspike protein (gp208)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth G]	UNK_F_TYPE	e6f7kG2	A: beta sandwiches	X: Domain in virus attachment proteins (From Topology)	H: Domain in virus attachment proteins (From Topology)	T: Domain in virus attachment proteins	F: UNK_F_TYPE	ECOD (1.6)
F [auth G]	Glyco_hydro_120	e6f7kG1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
E [auth F]	UNK_F_TYPE	e6f7kF2	A: beta sandwiches	X: Domain in virus attachment proteins (From Topology)	H: Domain in virus attachment proteins (From Topology)	T: Domain in virus attachment proteins	F: UNK_F_TYPE	ECOD (1.6)
E [auth F]	Glyco_hydro_120	e6f7kF1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
D	UNK_F_TYPE	e6f7kD2	A: beta sandwiches	X: Domain in virus attachment proteins (From Topology)	H: Domain in virus attachment proteins (From Topology)	T: Domain in virus attachment proteins	F: UNK_F_TYPE	ECOD (1.6)
D	Glyco_hydro_120	e6f7kD1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
C	UNK_F_TYPE	e6f7kC2	A: beta sandwiches	X: Domain in virus attachment proteins (From Topology)	H: Domain in virus attachment proteins (From Topology)	T: Domain in virus attachment proteins	F: UNK_F_TYPE	ECOD (1.6)
C	Glyco_hydro_120	e6f7kC1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
B	UNK_F_TYPE	e6f7kB2	A: beta sandwiches	X: Domain in virus attachment proteins (From Topology)	H: Domain in virus attachment proteins (From Topology)	T: Domain in virus attachment proteins	F: UNK_F_TYPE	ECOD (1.6)
B	Glyco_hydro_120	e6f7kB1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)
A	UNK_F_TYPE	e6f7kA2	A: beta sandwiches	X: Domain in virus attachment proteins (From Topology)	H: Domain in virus attachment proteins (From Topology)	T: Domain in virus attachment proteins	F: UNK_F_TYPE	ECOD (1.6)
A	Glyco_hydro_120	e6f7kA1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: Glyco_hydro_120	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	PF13229	Right handed beta helix region (Beta_helix)	Right handed beta helix region	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	Tailspike	-	biological process involved in interspecies interaction between organisms biological process involved in interaction with host biological process involved in symbiotic interaction viral process viral life cycle	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	IPR006626	Parallel beta-helix repeat	Repeat
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	IPR012334	Pectin lyase fold	Homologous Superfamily
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	IPR040775	Tail spike TSP1/Gp66, N-terminal domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	IPR039448	Right handed beta helix domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G]	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.