6F5Z | pdb_00006f5z

Complex between the Haloferax volcanii Trm112 methyltransferase activator and the Hvo_0019 putative methyltransferase


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DAnoctamine6f5zD1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
CHistone,Histone_H2A_Ce6f5zC1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Histone,Histone_H2A_CECOD (v294.1)
BHistone,Histone_H2A_Ce6f5zB1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Histone,Histone_H2A_CECOD (v294.1)
AAnoctamine6f5zA1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, D
PF03966Trm112p-like protein (Trm112p)Trm112p-like proteinThe function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA ...The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W [1]. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast [2]. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices [2].
Domain
A, B
PF08241Methyltransferase domain (Methyltransf_11)Methyltransferase domainMembers of this family are SAM dependent methyltransferases. Domain