Annotations: 6F4A

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SUV3_C	e6f4aB3	A: alpha bundles	X: Spectrin repeat-like	H: MIT domain (From Topology)	T: MIT domain	F: SUV3_C	ECOD (1.6)
B	UNK_F_TYPE	e6f4aB6	A: alpha bundles	X: immunoglobulin/albumin-binding domain-like	H: Phosphoprotein XD domain (From Topology)	T: Phosphoprotein XD domain	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6f4aB1	A: alpha complex topology	X: Sigma2 domain-like	H: Sigma2 domain of RNA polymerase sigma factors (From Topology)	T: Sigma2 domain of RNA polymerase sigma factors	F: UNK_F_TYPE	ECOD (1.6)
B	DEAD_4	e6f4aB5	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: DEAD_4	ECOD (1.6)
B	Helicase_C_5	e6f4aB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Helicase_C_5	ECOD (1.6)
A	RNB	e6f4aA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: RNB	ECOD (1.6)
A	UNK_F_TYPE	e6f4aA4	A: beta barrels	X: SH3	H: SH3	T: SH3	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6f4aA2	A: alpha arrays	X: HTH	H: HTH	T: winged	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF00271	Helicase conserved C-terminal domain (Helicase_C)	Helicase conserved C-terminal domain	The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.	Domain
B	PF22527	DEXQ-box helicase domain of Suv3 (DEXQc_Suv3)	DEXQ-box helicase domain of Suv3	This entry represents the DEXQ-box helicase domain of Suv3 [1].	Domain
B	PF12513	ATP-dependent RNA helicase SUV3 C-terminal domain (SUV3_C)	ATP-dependent RNA helicase SUV3 C-terminal domain	This domain is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The domain is found in association with Pfam:PF00271 and it is found in ATP-dependent RNA helicase SUV3 from eukaryotes. The yeast mitochondrial degradoso ...	This domain is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The domain is found in association with Pfam:PF00271 and it is found in ATP-dependent RNA helicase SUV3 from eukaryotes. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes.	Domain
A	PF00773	RNB domain (RNB)	RNB domain	This domain is the catalytic domain of ribonuclease II [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	RNA (5'-R(PAPGPAPUPAPC)-3')	-	-	-
B	Suv3 helicase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding 3'-5'-RNA exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity exoribonuclease II activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity nucleic acid conformation isomerase activity isomerase activity helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity RNA binding nucleic acid binding	catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process mitochondrial RNA metabolic process macromolecule metabolic process mitochondrial RNA catabolic process RNA catabolic process catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process mitochondrial RNA metabolic process macromolecule metabolic process mitochondrial RNA catabolic process RNA catabolic process Group I intron splicing RNA splicing RNA splicing, via transesterification reactions with guanosine as nucleophile gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process RNA biosynthetic process nucleic acid biosynthetic process RNA splicing, via transesterification reactions biosynthetic process RNA processing DNA-templated DNA replication DNA metabolic process mitochondrial DNA metabolic process DNA replication mitochondrial DNA replication mitochondrial gene expression mitochondrial RNA processing RNA 3'-end processing mitochondrial RNA 3'-end processing	membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex intracellular anatomical structure catalytic complex mitochondrion intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure mitochondrial degradosome organelle cytoplasm exoribonuclease complex
A	Exoribonuclease II, mitochondrial	3'-5'-RNA exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity exoribonuclease II activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity RNA binding 3'-5'-RNA exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity exoribonuclease II activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity RNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process mitochondrial RNA metabolic process macromolecule metabolic process mitochondrial RNA catabolic process RNA catabolic process catabolic process RNA metabolic process primary metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process nucleic acid catabolic process metabolic process cellular process mitochondrial RNA metabolic process macromolecule metabolic process mitochondrial RNA catabolic process RNA catabolic process regulation of cellular process negative regulation of biological process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process mRNA catabolic process regulation of biological process negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process mRNA metabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule membraneless organelle supramolecular complex P-body membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule membraneless organelle supramolecular complex P-body mitochondrial protein-containing complex protein-containing complex catalytic complex mitochondrial degradosome exoribonuclease complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR050699	RNA/DNA Helicase	Family
B	IPR001650	Helicase, C-terminal domain-like	Domain
B	IPR022192	ATP-dependent RNA helicase SUV3, C-terminal domain	Domain
B	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
B	IPR044774	Suv3, DEXQ-box helicase domain	Domain
B	IPR055206	ATP-dependent RNA helicase SUV3, DEXQ-box helicase domain	Domain
B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001900	Ribonuclease II/R	Domain
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A	IPR050180	RNR Ribonuclease	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.