6F4A
Yeast mitochondrial RNA degradosome complex mtEXO
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RNB | e6f4aA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: RNB | ECOD (1.6) |
A | UNK_F_TYPE | e6f4aA4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: UNK_F_TYPE | ECOD (1.6) |
A | UNK_F_TYPE | e6f4aA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: UNK_F_TYPE | ECOD (1.6) |
B | SUV3_C | e6f4aB3 | A: alpha bundles | X: Spectrin repeat-like | H: MIT domain (From Topology) | T: MIT domain | F: SUV3_C | ECOD (1.6) |
B | UNK_F_TYPE | e6f4aB6 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Phosphoprotein XD domain (From Topology) | T: Phosphoprotein XD domain | F: UNK_F_TYPE | ECOD (1.6) |
B | UNK_F_TYPE | e6f4aB1 | A: alpha complex topology | X: Sigma2 domain-like | H: Sigma2 domain of RNA polymerase sigma factors (From Topology) | T: Sigma2 domain of RNA polymerase sigma factors | F: UNK_F_TYPE | ECOD (1.6) |
B | DEAD_4 | e6f4aB5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DEAD_4 | ECOD (1.6) |
B | Helicase_C_5 | e6f4aB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00773 | RNB domain (RNB) | RNB domain | This domain is the catalytic domain of ribonuclease II [1]. | Domain | |
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain | |
PF22527 | DEXQ-box helicase domain of Suv3 (DEXQc_Suv3) | DEXQ-box helicase domain of Suv3 | This entry represents the DEXQ-box helicase domain of Suv3 [1]. | Domain | |
PF12513 | Mitochondrial degradasome RNA helicase subunit C terminal (SUV3_C) | Mitochondrial degradasome RNA helicase subunit C terminal | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001900 | Ribonuclease II/R | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR050180 | RNR Ribonuclease | Family | |
IPR050699 | RNA/DNA Helicase | Family | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR044774 | Suv3, DEXQ-box helicase domain | Domain | |
IPR022192 | Mitochondrial degradasome RNA helicase subunit, C-terminal domain | Domain | |
IPR011545 | DEAD/DEAH box helicase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |