6EZ3 | pdb_00006ez3

Structure of CDPS from Staphylococcus haemolyticus

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Nucleotidylyl transferase	8084024	3001541	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Nucleotidylyl transferase	8084024	3001541	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Nucleotidylyl transferase	8084024	3001541	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Nucleotidylyl transferase	8084024	3001541	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleotidylyl transferase	8084024	3001541	SCOP2B (2022-06-29)
A	SCOP2 Family	Cyclodipeptide synthase-like	8084023	4004834	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotidylyl transferase	8084024	3001541	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	CDPS	e6ez3F1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains (From Topology)	T: HUP domains	F: CDPS	ECOD (1.6)
E	CDPS	e6ez3E1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains (From Topology)	T: HUP domains	F: CDPS	ECOD (1.6)
D	CDPS	e6ez3D1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains (From Topology)	T: HUP domains	F: CDPS	ECOD (1.6)
C	CDPS	e6ez3C1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains (From Topology)	T: HUP domains	F: CDPS	ECOD (1.6)
B	CDPS	e6ez3B1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains (From Topology)	T: HUP domains	F: CDPS	ECOD (1.6)
A	CDPS	e6ez3A1	A: a/b three-layered sandwiches	X: HUP domain-like	H: HUP domains (From Topology)	T: HUP domains	F: CDPS	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.50.11710	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cyclodipeptide synthase	CATH (4.3.0)
E	3.40.50.11710	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cyclodipeptide synthase	CATH (4.3.0)
D	3.40.50.11710	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cyclodipeptide synthase	CATH (4.3.0)
C	3.40.50.11710	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cyclodipeptide synthase	CATH (4.3.0)
B	3.40.50.11710	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cyclodipeptide synthase	CATH (4.3.0)
A	3.40.50.11710	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Cyclodipeptide synthase	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Cyclo(L-leucyl-L-leucyl) synthase	aminoacyltransferase activity acyltransferase activity transferase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR038622	Cyclodipeptide synthase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR030903	Cyclodipeptide synthase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.