6EM1 | pdb_00006em1

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Q [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
Q [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
EA [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
GA [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
HA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8061969 3000110 SCOP2B (2022-06-29)
DA [auth P]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
CA [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
T [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
S [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
P [auth B]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
N [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Q [auth C]Actine6em1C2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
Q [auth C]Ald_deCOasee6em1C3 A: a/b three-layered sandwichesX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ald_deCOaseECOD (v294.1)
Y [auth j]Actine6em1j1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
AA [auth M]Actine6em1M1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
EA [auth Q]Actine6em1Q1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
FA [auth S]Actine6em1S1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
GA [auth V]Actine6em1V1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
HA [auth Y]Actine6em1Y1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
F [auth A]Actine6em1A1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
E [auth 5]Actine6em151 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
QA [auth t]Actine6em1t1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
NA [auth D]Actine6em1D1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
D [auth 4]NADHdhe6em141 A: a/b three-layered sandwichesX: Family A G protein-coupled receptor-likeH: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (v294.1)
LA [auth K]Actine6em1K1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
DA [auth P]Actine6em1P1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
CA [auth O]Actine6em1O1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
BA [auth N]Actine6em1N1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
Z [auth L]Actine6em1L1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
X [auth i]Actine6em1i1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
W [auth H]Actine6em1H1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
V [auth h]Actine6em1h1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
U [auth G]Actine6em1G1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
T [auth f]Actine6em1f1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
B [auth F]Actine6em1F1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
S [auth E]Actine6em1E1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
R [auth e]Actine6em1e1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
P [auth B]Actine6em1B1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
N [auth y]Actine6em1y1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)
M [auth W]Actine6em1W1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ActinECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth 3]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
C [auth 3]PF04874Mak16 protein C-terminal region (Mak16)Mak16 protein C-terminal region- Family
Q [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
Q [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
AA [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
AA [auth M]PF00467KOW motif (KOW)KOW motif- Family
FA [auth S]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
FA [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
GA [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
GA [auth V]PF09420Ribosome biogenesis protein Nop16 (Nop16)Ribosome biogenesis protein Nop16- Family
HA [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
HA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
HA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
F [auth A]PF04427Brix domain (Brix)Brix domainDomain
NA [auth D]PF13959ATP-dependent rRNA helicase SPB4-like, C-terminal extension (CTE_SPB4)ATP-dependent rRNA helicase SPB4-like, C-terminal extensionThis short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual ...This short domain is found at the C-terminus of many helicase proteins, including ATP-dependent rRNA helicase SPB4 from Saccharomyces cerevisiae, which is involved in the biogenesis of 60S ribosomal subunits. SPB4 is organised into four domains: dual RecA domains (Pfam:PF00270 and Pfam:PF00271), a C-terminal extension (CTE, represented by this entry) and a C-terminal tail (Pfam:PF23681). This domain packs closely onto the catalytic core and engages the four nucleotides immediately 5' to those within the RNA binding pocket. It shows a mainly alpha- helical structure [1].
Domain
NA [auth D]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
LA [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
DA [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
CA [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
CA [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
W [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
W [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
U [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
B [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
B [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
B [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
S [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
S [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
P [auth B]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain
P [auth B]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
M [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
M [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth x]Ribosome production factor 1
C [auth 3]Protein MAK16-
O [auth z]UPF0642 protein YBL028C- -
Q [auth C]60S ribosomal protein L4-A
Y [auth j]60S ribosomal protein L37-A
AA [auth M]60S ribosomal protein L14-A
EA [auth Q]60S ribosomal protein L18-A
FA [auth S]60S ribosomal protein L20-A
GA [auth V]60S ribosomal protein L23-A
HA [auth Y]60S ribosomal protein L26-A
I [auth r]Ribosome biogenesis protein NSA2-
H [auth J]rRNA-processing protein EBP2
G [auth b]Nucleolar GTP-binding protein 1
F [auth A]Ribosome biogenesis protein BRX1
E [auth 5]Ribosome biogenesis protein NSA1-
QA [auth t]Ribosome biogenesis protein RLP7
PA [auth n]Pescadillo homolog
OA [auth o]Ribosome biogenesis protein 15
NA [auth D]ATP-dependent RNA helicase HAS1
D [auth 4]Ribosomal RNA-processing protein 1-
MA [auth m]Ribosome biogenesis protein ERB1
LA [auth K]Proteasome-interacting protein CIC1
KA [auth 6]5.8S ribosomal RNA---
JA [auth 2]5.8S ribosomal RNA---
IA [auth 1]25S ribosomal RNA---
DA [auth P]60S ribosomal protein L17-A
CA [auth O]60S ribosomal protein L16-A
BA [auth N]60S ribosomal protein L15-A
Z [auth L]60S ribosomal protein L13-A
X [auth i]60S ribosomal protein L36-B
W [auth H]60S ribosomal protein L9-A
V [auth h]60S ribosomal protein L35-A
U [auth G]60S ribosomal protein L8-A
T [auth f]60S ribosomal protein L33-A
B [auth F]60S ribosomal protein L7-A
S [auth E]60S ribosomal protein L6-A
R [auth e]60S ribosomal protein L32
P [auth B]60S ribosomal protein L3
N [auth y]Eukaryotic translation initiation factor 6
M [auth W]Ribosome assembly factor MRT4
L [auth v]Nucleolar protein 16-
K [auth u]Ribosome biogenesis protein RLP24
J [auth s]Nuclear GTP-binding protein NUG1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth x]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
A [auth x]IPR007109Brix domainDomain
C [auth 3]IPR006958Mak16 proteinFamily
C [auth 3]IPR029004Ribosomal eL28/Mak16Domain
O [auth z]IPR019434Domain of unknown function DUF2423Domain
Q [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
Q [auth C]IPR002136Large ribosomal subunit protein uL4Family
Q [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
Q [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
Q [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Y [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
Y [auth j]IPR001569Large ribosomal subunit protein eL37Family
Y [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
Y [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth M]IPR039660Large ribosomal subunit protein eL14Family
AA [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
AA [auth M]IPR005824KOWDomain
EA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
EA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
EA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth S]IPR028877Large ribosomal subunit protein eL20Family
FA [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
FA [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
GA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
GA [auth V]IPR000218Large ribosomal subunit protein uL14Family
GA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
HA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
HA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
HA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth Y]IPR005824KOWDomain
HA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
I [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
I [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth J]IPR008610Eukaryotic rRNA processingFamily
G [auth b]IPR024926Nucleolar GTP-binding protein 1Family
G [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
G [auth b]IPR012973NOG, C-terminalDomain
G [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
G [auth b]IPR041623NOG1, N-terminal helical domainDomain
G [auth b]IPR006073GTP binding domainDomain
G [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth A]IPR026532Ribosome biogenesis protein BRX1Family
F [auth A]IPR007109Brix domainDomain
E [auth 5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
E [auth 5]IPR037379WDR74/Nsa1Family
QA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
QA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
QA [auth t]IPR039699Large ribosomal subunit protein uL30Family
QA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
QA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
PA [auth n]IPR010613PescadilloFamily
PA [auth n]IPR001357BRCT domainDomain
PA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
OA [auth o]IPR000504RNA recognition motif domainDomain
OA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
OA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
OA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
NA [auth D]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
NA [auth D]IPR014014RNA helicase, DEAD-box type, Q motifDomain
NA [auth D]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
NA [auth D]IPR011545DEAD/DEAH-box helicase domainDomain
NA [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
NA [auth D]IPR001650Helicase, C-terminal domain-likeDomain
NA [auth D]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
NA [auth D]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
D [auth 4]IPR010301Ribosomal RNA processing protein 1Family
MA [auth m]IPR019775WD40 repeat, conserved siteConserved Site
MA [auth m]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MA [auth m]IPR028598WD repeat BOP1/Erb1Family
MA [auth m]IPR001680WD40 repeatRepeat
MA [auth m]IPR012953BOP1, N-terminal domainDomain
MA [auth m]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
LA [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
LA [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
DA [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
DA [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
DA [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
DA [auth P]IPR001063Large ribosomal subunit protein uL22Family
CA [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
CA [auth O]IPR005822Large ribosomal subunit protein uL13Family
CA [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
CA [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
BA [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
BA [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
BA [auth N]IPR000439Large ribosomal subunit protein eL15Family
Z [auth L]IPR001380Large ribosomal subunit protein eL13Family
Z [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
X [auth i]IPR000509Large ribosomal subunit protein eL36Family
X [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
W [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
W [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
W [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
W [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
V [auth h]IPR001854Large ribosomal subunit protein uL29Family
V [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
V [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
U [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
U [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
U [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
U [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
U [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
U [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
T [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
T [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
T [auth f]IPR001780Large ribosomal subunit protein eL33Family
T [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
B [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
B [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
B [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
B [auth F]IPR039699Large ribosomal subunit protein uL30Family
B [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
B [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
B [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
S [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
S [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
S [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
S [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth E]IPR000915Large ribosomal subunit protein eL6Family
R [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
R [auth e]IPR001515Large ribosomal subunit protein eL32Family
R [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
P [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
P [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
P [auth B]IPR000597Large ribosomal subunit protein uL3Family
P [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
P [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
N [auth y]IPR002769Translation initiation factor IF6Family
M [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
M [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
M [auth W]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
M [auth W]IPR051742Ribosomal Assembly Factor uL10Family
M [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
M [auth W]IPR033867Ribosome assembly factor Mrt4Family
L [auth v]IPR019002Ribosome biogenesis protein Nop16Family
K [auth u]IPR011017TRASH domainDomain
K [auth u]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
K [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
K [auth u]IPR056366Large ribosomal subunit protein eL24Family
J [auth s]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
J [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
J [auth s]IPR006073GTP binding domainDomain
J [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
J [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
J [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily