6E9D | pdb_00006e9d

Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth t]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YA [auth s]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XA [auth r]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WA [auth q]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VA [auth p]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
UA [auth o]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PA [auth j]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OA [auth i]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NA [auth h]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KA [auth e]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JA [auth d]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
IA [auth c]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HA [auth b]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GA [auth a]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FB [auth z]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EB [auth y]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EA [auth 5]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DB [auth x]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DA [auth 4]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CB [auth w]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BB [auth v]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BA [auth 2]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AB [auth u]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AA [auth 1]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth t]OB_NTP_binde6e9dt1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
ZOB_NTP_binde6e9dZ1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
YA [auth s]OB_NTP_binde6e9ds1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
YOB_NTP_binde6e9dY1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
XA [auth r]OB_NTP_binde6e9dr1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
XOB_NTP_binde6e9dX1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
WA [auth q]OB_NTP_binde6e9dq1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
WOB_NTP_binde6e9dW1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
VA [auth p]OB_NTP_binde6e9dp1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
VOB_NTP_binde6e9dV1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
UA [auth o]OB_NTP_binde6e9do1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
UOB_NTP_binde6e9dU1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
TA [auth n]OB_NTP_binde6e9dn1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
TOB_NTP_binde6e9dT1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
SA [auth m]OB_NTP_binde6e9dm1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
SOB_NTP_binde6e9dS1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
RA [auth l]OB_NTP_binde6e9dl1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
ROB_NTP_binde6e9dR1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
QA [auth k]OB_NTP_binde6e9dk1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
QOB_NTP_binde6e9dQ1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
PA [auth j]OB_NTP_binde6e9dj1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
POB_NTP_binde6e9dP1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
OA [auth i]OB_NTP_binde6e9di1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
OOB_NTP_binde6e9dO1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
NA [auth h]OB_NTP_binde6e9dh1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
NOB_NTP_binde6e9dN1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
MA [auth g]OB_NTP_binde6e9dg1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
MOB_NTP_binde6e9dM1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
LA [auth f]OB_NTP_binde6e9df1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
LOB_NTP_binde6e9dL1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
KA [auth e]OB_NTP_binde6e9de1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
KOB_NTP_binde6e9dK1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
JA [auth d]OB_NTP_binde6e9dd1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
JOB_NTP_binde6e9dJ1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
IA [auth c]OB_NTP_binde6e9dc1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
IOB_NTP_binde6e9dI1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
HB [auth 8]OB_NTP_binde6e9d81 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
HA [auth b]OB_NTP_binde6e9db1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
HOB_NTP_binde6e9dH1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
GB [auth 7]OB_NTP_binde6e9d71 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
GA [auth a]OB_NTP_binde6e9da1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
GOB_NTP_binde6e9dG1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
FB [auth z]OB_NTP_binde6e9dz1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
FA [auth 6]OB_NTP_binde6e9d61 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
FOB_NTP_binde6e9dF1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
EB [auth y]OB_NTP_binde6e9dy1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
EA [auth 5]OB_NTP_binde6e9d51 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
EOB_NTP_binde6e9dE1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
DB [auth x]OB_NTP_binde6e9dx1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
DA [auth 4]OB_NTP_binde6e9d41 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
DOB_NTP_binde6e9dD1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
CB [auth w]OB_NTP_binde6e9dw1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
CA [auth 3]OB_NTP_binde6e9d31 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
COB_NTP_binde6e9dC1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
BB [auth v]OB_NTP_binde6e9dv1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
BA [auth 2]OB_NTP_binde6e9d21 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
BOB_NTP_binde6e9dB1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
AB [auth u]OB_NTP_binde6e9du1 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
AA [auth 1]OB_NTP_binde6e9d11 A: alpha arraysX: L-aspartase middle domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: OB_NTP_bindECOD (v295.2)
ACel124_Ce6e9dA1 A: alpha arraysX: Major facilitator superfamily (MFS) general substrate transporterH: Major facilitator superfamily (MFS) general substrate transporterT: Major facilitator superfamily (MFS) general substrate transporterF: Cel124_CECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily