6DXU
Crystal Structure of Parabacteroides merdae Beta-Glucuronidase (GUS)
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | PF02837 | e6dxuD1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF02837 | ECOD (1.6) |
A [auth D] | PF00703 | e6dxuD4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
A [auth D] | PF16355 | e6dxuD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16355 | ECOD (1.6) |
A [auth D] | PF18565 | e6dxuD5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF18565 | ECOD (1.6) |
A [auth D] | PF02836 | e6dxuD3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
B [auth A] | PF02837 | e6dxuA5 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF02837 | ECOD (1.6) |
B [auth A] | PF00703 | e6dxuA4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
B [auth A] | PF16355 | e6dxuA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16355 | ECOD (1.6) |
B [auth A] | PF18565 | e6dxuA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF18565 | ECOD (1.6) |
B [auth A] | PF02836 | e6dxuA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
C [auth B] | PF02837 | e6dxuB2 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF02837 | ECOD (1.6) |
C [auth B] | PF00703 | e6dxuB5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
C [auth B] | PF16355 | e6dxuB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16355 | ECOD (1.6) |
C [auth B] | PF18565 | e6dxuB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF18565 | ECOD (1.6) |
C [auth B] | PF02836 | e6dxuB4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
D [auth C] | PF02837 | e6dxuC1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF02837 | ECOD (1.6) |
D [auth C] | PF00703 | e6dxuC3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
D [auth C] | PF16355 | e6dxuC5 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF16355 | ECOD (1.6) |
D [auth C] | PF18565 | e6dxuC4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF18565 | ECOD (1.6) |
D [auth C] | PF02836 | e6dxuC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], B [auth A], C [auth B], D [auth C] | PF02836 | Glycosyl hydrolases family 2, TIM barrel domain (Glyco_hydro_2_C) | Glycosyl hydrolases family 2, TIM barrel domain | This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | Domain |
A [auth D], B [auth A], C [auth B], D [auth C] | PF00703 | Glycosyl hydrolases family 2 (Glyco_hydro_2) | Glycosyl hydrolases family 2 | This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | Domain |
A [auth D], B [auth A], C [auth B], D [auth C] | PF18565 | Glycoside hydrolase family 2 C-terminal domain 5 (Glyco_hydro2_C5) | Glycoside hydrolase family 2 C-terminal domain 5 | Domain 5 is found in dimeric beta-D-galactosidase from Paracoccus sp. 32d, which contributes to stabilization of the functional dimer. It is suggested that the location of this domain 5, may be one of the factors responsible for the creation of a fun ... | Domain |
A [auth D], B [auth A], C [auth B], D [auth C] | PF02837 | Glycosyl hydrolases family 2, sugar binding domain (Glyco_hydro_2_N) | Glycosyl hydrolases family 2, sugar binding domain | This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction. | Domain |
A [auth D], B [auth A], C [auth B], D [auth C] | PF16355 | Domain of unknown function (DUF4982) (DUF4982) | Domain of unknown function (DUF4982) | This domain is found towards the C terminus of Beta-glucuronidase from Formosa agariphila (P17_GH2) and similar proteins mainly from bacteria and fungi. P17_GH2 is involved in the degradation of the polysaccharide ulvan. The function of this domain, ... | Domain |