6DPS

Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the oxidised form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6dpsa_	All beta proteins	Immunoglobulin-like beta-sandwich	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	automated matches	automated matches	(Neisseria meningitidis alpha14 ) [TaxId: 662598 ],	SCOPe (2.08)
B	d6dpsb_	All beta proteins	Immunoglobulin-like beta-sandwich	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	automated matches	automated matches	(Neisseria meningitidis alpha14 ) [TaxId: 662598 ],	SCOPe (2.08)
C	d6dpsc_	All beta proteins	Immunoglobulin-like beta-sandwich	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	automated matches	automated matches	(Neisseria meningitidis alpha14 ) [TaxId: 662598 ],	SCOPe (2.08)
D	d6dpsd_	All beta proteins	Immunoglobulin-like beta-sandwich	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	automated matches	automated matches	(Neisseria meningitidis alpha14 ) [TaxId: 662598 ],	SCOPe (2.08)
E	d6dpse_	All beta proteins	Immunoglobulin-like beta-sandwich	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	automated matches	automated matches	(Neisseria meningitidis alpha14 ) [TaxId: 662598 ],	SCOPe (2.08)
F	d6dpsf_	All beta proteins	Immunoglobulin-like beta-sandwich	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)	automated matches	automated matches	(Neisseria meningitidis alpha14 ) [TaxId: 662598 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080435	3002068	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080435	3002068	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080435	3002068	SCOP2B (2022-06-29)
D	SCOP2 Family	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080434	4007564	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080435	3002068	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080435	3002068	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Thiol:disulfide interchange protein DsbD N-terminal domain (DsbD-alpha)	8080435	3002068	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF11412	e6dpsA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF11412	ECOD (1.6)
B	PF11412	e6dpsB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF11412	ECOD (1.6)
C	PF11412	e6dpsC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF11412	ECOD (1.6)
D	PF11412	e6dpsD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF11412	ECOD (1.6)
E	PF11412	e6dpsE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF11412	ECOD (1.6)
F	PF11412	e6dpsF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF11412	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.1250	Mainly Beta	Sandwich	Immunoglobulin-like	Thiol:disulfide interchange protein DsbD, N-terminal domain	CATH (4.3.0)
B	2.60.40.1250	Mainly Beta	Sandwich	Immunoglobulin-like	Thiol:disulfide interchange protein DsbD, N-terminal domain	CATH (4.3.0)
C	2.60.40.1250	Mainly Beta	Sandwich	Immunoglobulin-like	Thiol:disulfide interchange protein DsbD, N-terminal domain	CATH (4.3.0)
D	2.60.40.1250	Mainly Beta	Sandwich	Immunoglobulin-like	Thiol:disulfide interchange protein DsbD, N-terminal domain	CATH (4.3.0)
E	2.60.40.1250	Mainly Beta	Sandwich	Immunoglobulin-like	Thiol:disulfide interchange protein DsbD, N-terminal domain	CATH (4.3.0)
F	2.60.40.1250	Mainly Beta	Sandwich	Immunoglobulin-like	Thiol:disulfide interchange protein DsbD, N-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF11412	Thiol:disulfide interchange protein DsbD, N-terminal (DsbD_N)	Thiol:disulfide interchange protein DsbD, N-terminal	This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter [1-3]. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming d ...	This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter [1-3]. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming disulfides with oxidized DsbC, DsbE, or DsbG as well as with reduced DsbD [1-3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Thiol:disulfide interchange protein DsbD	oxidoreductase activity, acting on a sulfur group of donors oxidoreductase activity disulfide oxidoreductase activity catalytic activity, acting on a protein protein-disulfide reductase activity protein-disulfide reductase (NAD(P)H) activity catalytic activity oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor electron transfer activity	cytochrome complex assembly cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis	cell periphery plasma membrane membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR003834	Cytochrome C biogenesis protein, transmembrane domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012336	Thioredoxin-like fold	Domain
A, B, C, D, E A, B, C, D, E, F	IPR022910	Thiol:disulphide interchange protein DsbD	Family
A, B, C, D, E A, B, C, D, E, F	IPR028250	Thiol:disulfide interchange protein DsbD, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR035671	DsbD gamma	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013766	Thioredoxin domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR036929	Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.