6DPS
Crystal Structure of Neisseria meningitidis DsbD n-terminal domain in the oxidised form
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080435 | 3002068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080435 | 3002068 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080435 | 3002068 | SCOP2B (2022-06-29) |
D | SCOP2 Family | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080434 | 4007564 | SCOP2 (2022-06-29) |
D | SCOP2 Superfamily | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080435 | 3002068 | SCOP2 (2022-06-29) |
E | SCOP2B Superfamily | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080435 | 3002068 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) | 8080435 | 3002068 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DsbC | e6dpsA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DsbC | ECOD (1.6) |
B | DsbC | e6dpsB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DsbC | ECOD (1.6) |
C | DsbC | e6dpsC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DsbC | ECOD (1.6) |
D | DsbC | e6dpsD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DsbC | ECOD (1.6) |
E | DsbC | e6dpsE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DsbC | ECOD (1.6) |
F | DsbC | e6dpsF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: DsbC | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1250 | Mainly Beta | Sandwich | Immunoglobulin-like | Thiol:disulfide interchange protein DsbD, N-terminal domain | CATH (4.3.0) |
B | 2.60.40.1250 | Mainly Beta | Sandwich | Immunoglobulin-like | Thiol:disulfide interchange protein DsbD, N-terminal domain | CATH (4.3.0) |
C | 2.60.40.1250 | Mainly Beta | Sandwich | Immunoglobulin-like | Thiol:disulfide interchange protein DsbD, N-terminal domain | CATH (4.3.0) |
D | 2.60.40.1250 | Mainly Beta | Sandwich | Immunoglobulin-like | Thiol:disulfide interchange protein DsbD, N-terminal domain | CATH (4.3.0) |
E | 2.60.40.1250 | Mainly Beta | Sandwich | Immunoglobulin-like | Thiol:disulfide interchange protein DsbD, N-terminal domain | CATH (4.3.0) |
F | 2.60.40.1250 | Mainly Beta | Sandwich | Immunoglobulin-like | Thiol:disulfide interchange protein DsbD, N-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF11412 | Thiol:disulfide interchange protein DsbD, N-terminal (DsbD_N) | Thiol:disulfide interchange protein DsbD, N-terminal | This entry represents the N-terminal domain of DsbD, a transmembrane electron transporter [1-3]. DsbD binds to a DsbC dimer and selectively activates it using electrons from the cytoplasm. The N-terminal domain of DsbD (DsbDN) is capable of forming d ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028250 | Thiol:disulfide interchange protein DsbD, N-terminal domain | Domain | |
IPR013766 | Thioredoxin domain | Domain | |
IPR003834 | Cytochrome C biogenesis protein, transmembrane domain | Domain | |
IPR012336 | Thioredoxin-like fold | Domain | |
IPR022910 | Thiol:disulphide interchange protein DsbD | Family | |
IPR035671 | DsbD gamma | Domain | |
IPR036249 | Thioredoxin-like superfamily | Homologous Superfamily | |
IPR036929 | Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily | Homologous Superfamily |