6DK7 | pdb_00006dk7

RetS histidine kinase region with cobalt

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	p450	e6dk7H1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
G	p450	e6dk7G1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
F	p450	e6dk7F1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
E	p450	e6dk7E1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
D [auth B]	p450	e6dk7B1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
C [auth D]	p450	e6dk7D1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
B [auth C]	p450	e6dk7C1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)
A	p450	e6dk7A1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	PF00512	His Kinase A (phospho-acceptor) domain (HisKA)	His Kinase A (phospho-acceptor) domain	Dimerisation and phospho-acceptor domain of histidine kinases.	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	RetS (Regulator of Exopolysaccharide and Type III Secretion)	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding molecular sensor activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, nitrogenous group as acceptor phosphotransferase activity, alcohol group as acceptor protein histidine kinase activity transferase activity, transferring phosphorus-containing groups phosphorelay sensor kinase activity molecular function regulator activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR011622	7TM-DISM receptor, extracellular domain, type 2	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR003594	Histidine kinase/HSP90-like ATPase domain	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR005467	Histidine kinase domain	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR011006	CheY-like superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR004358	Signal transduction histidine kinase-related protein, C-terminal	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR001789	Signal transduction response regulator, receiver domain	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR011623	7TM-DISM receptor, extracellular domain, type 1	Domain
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR036097	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B], E, A, B [auth C], C [auth D], D [auth B], E, F, G, H	IPR003661	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.