6DBI
Cryo-EM structure of RAG in complex with 12-RSS and 23-RSS nicked DNA intermediates
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF12940 | e6dbiC2 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF12940 | ECOD (1.6) |
A [auth C] | PF12940 | e6dbiC1 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
A [auth C] | PF12940 | e6dbiC3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
C [auth A] | PF12940 | e6dbiA1 | A: alpha arrays | X: HTH | H: HTH | T: Ribbon-helix-helix | F: PF12940 | ECOD (1.6) |
C [auth A] | PF12940 | e6dbiA3 | A: alpha bundles | X: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | H: V(D)J recombination-activating protein 1 helical bundle domain (From Topology) | T: V(D)J recombination-activating protein 1 helical bundle domain | F: PF12940 | ECOD (1.6) |
C [auth A] | PF12940 | e6dbiA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF12940 | ECOD (1.6) |
B [auth D] | PF03089 | e6dbiD1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF03089 | ECOD (1.6) |
D [auth B] | PF03089 | e6dbiB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: PF03089 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], C [auth A] | PF12940 | Recombination-activation protein 1 (RAG1), recombinase (RAG1) | Recombination-activation protein 1 (RAG1), recombinase | - | Family |
B [auth D], D [auth B] | PF03089 | Recombination activating protein 2 (RAG2) | Recombination activating protein 2 | - | Repeat |