6D5B | pdb_00006d5b

Structure of Caldicellulosiruptor danielii CBM3 module of glycoside hydrolase WP_045175321

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6d5ba_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
B	d6d5bb_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
C	d6d5bc_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
D	d6d5bd_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
E	d6d5be_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
F	d6d5bf_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
G	d6d5bg_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
H	d6d5bh_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
I	d6d5bi_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
J	d6d5bj_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
K	d6d5bk_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
L	d6d5bl_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CBM_3	e6d5bA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
B	CBM_3	e6d5bB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
C	CBM_3	e6d5bC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
D	CBM_3	e6d5bD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
E	CBM_3	e6d5bE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
F	CBM_3	e6d5bF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
G	CBM_3	e6d5bG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
H	CBM_3	e6d5bH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
I	CBM_3	e6d5bI1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
J	CBM_3	e6d5bJ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
K	CBM_3	e6d5bK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)
L	CBM_3	e6d5bL1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_3	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
B	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
C	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
D	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
E	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
F	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
G	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
H	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
I	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
J	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
K	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
L	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	glycoside hydrolase WP_045175321	binding polysaccharide binding cellulose binding carbohydrate binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036966	Carbohydrate-binding module 3 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.