6D5B | pdb_00006d5b

Structure of Caldicellulosiruptor danielii CBM3 module of glycoside hydrolase WP_045175321

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6d5bl_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
K	d6d5bk_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
J	d6d5bj_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
I	d6d5bi_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
H	d6d5bh_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
G	d6d5bg_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
F	d6d5bf_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
E	d6d5be_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
D	d6d5bd_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
C	d6d5bc_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
B	d6d5bb_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)
A	d6d5ba_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	automated matches	automated matches	Caldicellulosiruptor danielii (Anaerocellum danielii ) [TaxId: 1387557 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	AAA_31	e6d5bL1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
K	AAA_31	e6d5bK1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
J	AAA_31	e6d5bJ1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
I	AAA_31	e6d5bI1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
H	AAA_31	e6d5bH1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
G	AAA_31	e6d5bG1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
F	AAA_31	e6d5bF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
E	AAA_31	e6d5bE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
D	AAA_31	e6d5bD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
C	AAA_31	e6d5bC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)
B	Glutaredoxin, ArsC	e6d5bB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Glutaredoxin, ArsC	ECOD (v294.1)
A	AAA_31	e6d5bA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: AAA_31	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
K	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
J	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
I	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
H	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
G	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
F	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
E	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
D	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
C	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
B	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)
A	2.60.40.710	Mainly Beta	Sandwich	Immunoglobulin-like	Endoglucanase-like	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	glycoside hydrolase WP_045175321	binding polysaccharide binding cellulose binding carbohydrate binding	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036966	Carbohydrate-binding module 3 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.