HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8039362 3000066 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCyclin-like 8039367 3000768 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCyclin-like 8039364 3000768 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Aubiquitine6cytA1 A: alpha arraysX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitinECOD (v295)
Dubiquitine6cytD1 A: alpha arraysX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitinECOD (v295)
Cubiquitine6cytC1 A: alpha arraysX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitinECOD (v295)
Bubiquitine6cytB1 A: alpha arraysX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitinECOD (v295)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (4.3.0)
A1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (4.3.0)
B1.10.472.10 Mainly Alpha Orthogonal Bundle Cyclin A domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain
PF00539Transactivating regulatory protein (Tat) (Tat)Transactivating regulatory protein (Tat)- Family
PF00134Cyclin, N-terminal domain (Cyclin_N)Cyclin, N-terminal domainCyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Domain
PF21797Cyclin-T2-like, C-terminal domain (CycT2-like_C)Cyclin-T2-like, C-terminal domainThis domain is found at the C-terminal end of human Cyclin-T2 (CycT2) and similar animal sequences. CycT2 is the regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P ...This domain is found at the C-terminal end of human Cyclin-T2 (CycT2) and similar animal sequences. CycT2 is the regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P-TEFB). This domain adopts s cyclin box fold consisting of five helices and a short C-terminal helix [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cyclin-dependent kinase 9
Protein Tat
E [auth N]RNA (5'-R(P*AP*UP*CP*UP*GP*AP*GP*CP*CP*UP*GP*GP*GP*AP*GP*CP*U)-3')---
AF4/FMR2 family member 4
Cyclin-T1

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
TPO Parent Component: THR

AA0038

:  O-phospho-L-threonine MOD:00047
ACE AA0038 , AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  O-phospho-L-threonine MOD:00047 , N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359