6CW2
Crystal structure of a yeast SAGA transcriptional coactivator Ada2/Gcn5 HAT subcomplex, crystal form 1
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d6cw2a_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth B] | d6cw2b2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth B] | d6cw2b1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8036007 | 3000403 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | Acetyltransf_10 | e6cw2D1 | A: a+b three layers | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) (From Topology) | T: Acyl-CoA N-acyltransferases (Nat) | F: Acetyltransf_10 | ECOD (1.6) |
B [auth C] | Myb_DNA-binding_1 | e6cw2C2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_1 | ECOD (1.6) |
B [auth C] | ZZ | e6cw2C1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: ZZ | ECOD (1.6) |
C [auth A] | V-set_8 | e6cw2A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth A] | C1-set_1 | e6cw2A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
D [auth B] | C1-set_4 | e6cw2B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D [auth B] | V-set | e6cw2B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
D [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C [auth A] | Antibody Fab Fragment | VH-CH1 | Homo sapiens (human) | IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
D [auth B] | Antibody Fab Fragment | L-KAPPA | Homo sapiens (human) | IGKV1-39*01, IGKV1D-39*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202436-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth A] | Heavy Chain | IGHV3 | - | histone acetyltransferase gcn5 | transcriptional adapter 2 | SAbDab (2024-09-13) |
D [auth B] | Light Chain | IGKV1 | Kappa | histone acetyltransferase gcn5 | transcriptional adapter 2 | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D] | PF00583 | Acetyltransferase (GNAT) family (Acetyltransf_1) | Acetyltransferase (GNAT) family | - | Family |
B [auth C] | PF00249 | Myb-like DNA-binding domain (Myb_DNA-binding) | Myb-like DNA-binding domain | This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D] | IPR018359 | Bromodomain, conserved site | Conserved Site |
A [auth D] | IPR000182 | GNAT domain | Domain |
A [auth D] | IPR001487 | Bromodomain | Domain |
A [auth D] | IPR036427 | Bromodomain-like superfamily | Homologous Superfamily |
A [auth D] | IPR016181 | Acyl-CoA N-acyltransferase | Homologous Superfamily |
A [auth D] | IPR037800 | Histone acetyltransferase GCN5 | Family |
B [auth C] | IPR043145 | Zinc finger, ZZ-type superfamily | Homologous Superfamily |
B [auth C] | IPR000433 | Zinc finger, ZZ-type | Domain |
B [auth C] | IPR041983 | ADA2-like, zinc finger, ZZ-type | Domain |
B [auth C] | IPR016827 | Transcriptional adaptor 2 | Family |
B [auth C] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
B [auth C] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
B [auth C] | IPR017884 | SANT domain | Domain |
B [auth C] | IPR001005 | SANT/Myb domain | Domain |
B [auth C] | IPR007526 | SWIRM domain | Domain |