6CQM

Crystal Structure of mitochondrial single-stranded DNA binding proteins from S. cerevisiae, Rim1 (Form2)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00436	e6cqmA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
B	PF00436	e6cqmB1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
C	PF00436	e6cqmC1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
D	PF00436	e6cqmD1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
E	PF00436	e6cqmE1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
F	PF00436	e6cqmF1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
G	PF00436	e6cqmG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)
H	PF00436	e6cqmH1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00436	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00436	Single-strand binding protein family (SSB)	Single-strand binding protein family	This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Single-stranded DNA-binding protein RIM1, mitochondrial	DNA binding binding organic cyclic compound binding single-stranded DNA binding nucleic acid binding	positive regulation of mitochondrial DNA metabolic process positive regulation of organelle organization positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of DNA replication positive regulation of biological process mitochondrial genome maintenance positive regulation of mitochondrial DNA replication mitochondrial DNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular component organization positive regulation of metabolic process organic substance metabolic process positive regulation of mitochondrial DNA metabolic process positive regulation of organelle organization positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of DNA replication positive regulation of biological process mitochondrial genome maintenance positive regulation of mitochondrial DNA replication mitochondrial DNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular component organization positive regulation of metabolic process organic substance metabolic process positive regulation of macromolecule metabolic process cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process positive regulation of cellular process mitochondrion organization regulation of biological process positive regulation of nucleobase-containing compound metabolic process DNA-templated DNA replication biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process regulation of organelle organization organic cyclic compound metabolic process organelle organization DNA replication positive regulation of DNA metabolic process mitochondrial DNA replication regulation of mitochondrion organization regulation of DNA-templated DNA replication positive regulation of DNA-templated DNA replication metabolic process cellular process regulation of mitochondrial DNA replication macromolecule metabolic process regulation of metabolic process regulation of mitochondrial DNA metabolic process regulation of DNA metabolic process regulation of DNA replication	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane-enclosed lumen nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle membrane-enclosed lumen nucleoid mitochondrial matrix intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle mitochondrial nucleoid non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000424	Primosome PriB/single-strand DNA-binding	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011344	Single-stranded DNA-binding protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.