6CP5 | pdb_00006cp5

Monomer yeast ATP synthase Fo reconstituted in nanodisc with inhibitor of oligomycin bound generated from focused refinement.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth X]ATP-synt_Ae6cp5X1 A: alpha bundlesX: F1F0 ATP synthase subunit A (From Topology)H: F1F0 ATP synthase subunit A (From Topology)T: F1F0 ATP synthase subunit AF: ATP-synt_AECOD (1.6)
J [auth T]ATP-synt_Ce6cp5T1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
I [auth S]ATP-synt_Ce6cp5S1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
H [auth R]ATP-synt_Ce6cp5R1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
G [auth Q]ATP-synt_Ce6cp5Q1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
F [auth P]ATP-synt_Ce6cp5P1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
E [auth O]ATP-synt_Ce6cp5O1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
D [auth N]ATP-synt_Ce6cp5N1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
C [auth M]ATP-synt_Ce6cp5M1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
B [auth L]ATP-synt_Ce6cp5L1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)
A [auth K]ATP-synt_Ce6cp5K1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: ATP-synt_CECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
P [auth J]PF04911ATP synthase j chain (ATP-synt_J)ATP synthase j chain- Family
L [auth X]PF00119ATP synthase A chain (ATP-synt_A)ATP synthase A chainDomain
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
P [auth J]ATP synthase subunit J, mitochondrial
O [auth U]ATP synthase subunit f, mitochondrial-
N [auth 7]ATP synthase subunit d, mitochondrial
M [auth Z]ATP synthase subunit 4, mitochondrial
L [auth X]ATP synthase subunit a
K [auth 8]ATP synthase protein 8
ATP synthase subunit 9, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
P [auth J]IPR006995ATP synthase, F0 complex, subunit JFamily
O [auth U]IPR019727ATP synthase, F0 complex, subunit F, mitochondria, fungiFamily
N [auth 7]IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialHomologous Superfamily
N [auth 7]IPR008689ATP synthase, F0 complex, subunit D, mitochondrialFamily
M [auth Z]IPR008688ATP synthase, F0 complex, subunit B/MI25Family
M [auth Z]IPR013837ATP synthase, F0 complex, subunit BFamily
L [auth X]IPR023011ATP synthase, F0 complex, subunit A, active siteActive Site
L [auth X]IPR000568ATP synthase, F0 complex, subunit AFamily
L [auth X]IPR035908ATP synthase, F0 complex, subunit A superfamilyHomologous Superfamily
L [auth X]IPR045083ATP synthase, F0 complex, subunit A, bacterial/mitochondriaFamily
K [auth 8]IPR009230ATP synthase protein 8, fungal typeFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891