6CM9
Structure of the cargo bound AP-1:Arf1:tetherin-Nef closed trimer monomeric subunit
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth B] | SCOP2B Superfamily | ARM repeat-like | 8082787 | 3000116 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
F [auth H] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089848 | 3002022 | SCOP2B (2022-06-29) |
E [auth G] | SCOP2 Family | Clathrin adaptor core protein | 8078175 | 4001978 | SCOP2 (2022-06-29) |
E [auth G] | SCOP2 Superfamily | ARM repeat-like | 8078176 | 3000116 | SCOP2 (2022-06-29) |
H [auth S] | SCOP2B Superfamily | SNARE-like | 8082711 | 3001113 | SCOP2B (2022-06-29) |
G [auth M] | SCOP2B Superfamily | mu adaptin domain-like | 8083652 | 3000810 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth N] | F-protein | e6cm9N1 | A: a+b three layers | X: Regulatory factor Nef (From Topology) | H: Regulatory factor Nef (From Topology) | T: Regulatory factor Nef | F: F-protein | ECOD (1.6) |
C [auth B] | Adaptin_N | e6cm9B1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
D [auth C] | Ras | e6cm9C1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
F [auth H] | Ras | e6cm9H1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
E [auth G] | Adaptin_N | e6cm9G1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Adaptin_N | ECOD (1.6) |
H [auth S] | Clat_adaptor_s | e6cm9S1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
G [auth M] | Adap_comp_sub_2nd | e6cm9M2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd | ECOD (1.6) |
G [auth M] | Adap_comp_sub_2nd,Adap_comp_sub_1st | e6cm9M1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Adap_comp_sub_2nd,Adap_comp_sub_1st | ECOD (1.6) |
G [auth M] | Clat_adaptor_s | e6cm9M3 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: Clat_adaptor_s | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth B] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
D [auth C] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
F [auth H] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
E [auth G] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
H [auth S] | 3.30.450.60 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (4.3.0) | |
G [auth M] | 3.30.450.60 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth C], F [auth H] | PF00025 | ADP-ribosylation factor family (Arf) | ADP-ribosylation factor family | Pfam combines a number of different Prosite families together | Domain |
E [auth G] | PF01602 | Adaptin N terminal region (Adaptin_N) | Adaptin N terminal region | - | Repeat |
H [auth S] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |
G [auth M] | PF01217 | Clathrin adaptor complex small chain (Clat_adaptor_s) | Clathrin adaptor complex small chain | - | Domain |
G [auth M] | PF00928 | Adaptor complexes medium subunit family (Adap_comp_sub) | Adaptor complexes medium subunit family | - | Family |