6CL6 | pdb_00006cl6

Structure of P. aeruginosa R2 pyocin fiber PA0620 comprising C-terminal residues 323-691

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TED	e6cl6A3	A: alpha bundles	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: TED	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.60.40.3940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
E	2.60.40.3940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
D	2.60.40.3940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
C	2.60.40.3940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
B	2.60.40.3940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
A	2.60.40.3940	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF21882	Putative tail fiber protein gp53-like, C-terminal (Gp53-like_C)	Putative tail fiber protein gp53-like, C-terminal	This entry represents a domain found at the C-terminal of putative tail fiber protein from Acinetobacter phage AP22 (Swiss:I2GUG0, gp53) and similar uncharacterised sequences from tailed bacteriophages and prophages mainly found in proteobacteria. It ...	This entry represents a domain found at the C-terminal of putative tail fiber protein from Acinetobacter phage AP22 (Swiss:I2GUG0, gp53) and similar uncharacterised sequences from tailed bacteriophages and prophages mainly found in proteobacteria. It shows structural similarities to other phage/virus host cell-binding fibres. These domains form a trimeric arrangement.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Tail fiber protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR051934	Bacteriophage Tail Fiber Structural Protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR054075	Putative tail fiber protein gp53-like, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR022225	Phage tail fibre protein, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.