6CHG | pdb_00006chg

Crystal structure of the yeast COMPASS catalytic module

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2 Family	Dpy-30 motif-like	8088527	4005379	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Dpy-30/Rlla-like	8104120	3001874	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Dpy-30	e6chgF1	A: alpha duplicates or obligate multimers	X: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	H: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	T: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	F: Dpy-30	ECOD (1.6)
E	Dpy-30	e6chgE1	A: alpha duplicates or obligate multimers	X: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	H: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit (From Topology)	T: Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit	F: Dpy-30	ECOD (1.6)
D	ANAPC4_WD40_9	e6chgD1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_9	ECOD (1.6)
C	SET	e6chgC1	A: beta barrels	X: beta-clip	H: SET domain-like (From Topology)	T: SET domain-like	F: SET	ECOD (1.6)
B	SPRY	e6chgB1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: SPRY	ECOD (1.6)
A	ANAPC4_WD40_5	e6chgA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_5	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.170.270.10	Mainly Beta	Beta Complex	Beta-clip-like	SET domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, F	PF05186	Dpy-30 motif (Dpy-30)	Dpy-30 motif	-	Motif
D	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
C	PF00856	SET domain (SET)	SET domain	-	Family
A	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth J]	H3	-	-	-
E, F	KLLA0E03521p	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
D	KLLA0A08800p	-	-	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
C	Histone-lysine N-methyltransferase, H3 lysine-4 specific	protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity histone H3K4 trimethyltransferase activity methyltransferase activity catalytic activity protein-lysine N-methyltransferase activity histone H3 methyltransferase activity catalytic activity, acting on a protein transferase activity, transferring one-carbon groups transferase activity S-adenosylmethionine-dependent methyltransferase activity histone methyltransferase activity histone H3K4 methyltransferase activity lysine N-methyltransferase activity protein methyltransferase activity histone modifying activity N-methyltransferase activity histone H3K4 trimethyltransferase activity methyltransferase activity catalytic activity RNA binding binding nucleic acid binding	methylation metabolic process cellular process	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex catalytic complex nucleus membrane-enclosed lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen nucleoplasm organelle lumen methyltransferase complex nuclear lumen
B	KLLA0C10945p	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding	-	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen
A	KLLA0E24487p	protein binding binding histone binding	-	membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure membrane-bounded organelle protein-containing complex Set1C/COMPASS complex histone methyltransferase complex intracellular anatomical structure catalytic complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle transferase complex intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle methyltransferase complex nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F	IPR007858	Dpy-30 motif	Conserved Site
E, F	IPR049629	DPY30/SDC1, dimerization/docking domain	Domain
D	IPR001680	WD40 repeat	Repeat
D	IPR019775	WD40 repeat, conserved site	Conserved Site
D	IPR037850	Retinoblastoma-binding protein 5/Swd1	Family
D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C	IPR024657	COMPASS complex Set1 subunit, N-SET domain	Domain
C	IPR024636	Histone lysine methyltransferase SET associated	Domain
C	IPR048669	Histone-lysine N-methyltransferase SET1, RNA-binding domain	Domain
C	IPR046341	SET domain superfamily	Homologous Superfamily
C	IPR001214	SET domain	Domain
C	IPR044570	Histone-lysine N-methyltransferase Set1-like	Family
C	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
C	IPR017111	Histone-lysine N-methyltransferase Set1, fungi	Family
C	IPR003616	Post-SET domain	Domain
B	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B	IPR001870	B30.2/SPRY domain	Domain
B	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
B	IPR037353	Histone methyltransferase complex subunit ASH2	Family
B	IPR003877	SPRY domain	Domain
A	IPR001680	WD40 repeat	Repeat
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily