6CBM

x-ray structure of NeoB from streptomyces fradiae in complex with PLP and neomycin (as the external aldimine) at pH 9

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UNK_F_TYPE	e6cbmA1	A: a+b two layers	X: C-terminal domain in some PLP-dependent transferases (From Topology)	H: C-terminal domain in some PLP-dependent transferases (From Topology)	T: C-terminal domain in some PLP-dependent transferases	F: UNK_F_TYPE	ECOD (1.6)
A	Aminotran_3_N	e6cbmA2	A: a/b three-layered sandwiches	X: PLP-dependent transferases (From Topology)	H: PLP-dependent transferases (From Topology)	T: PLP-dependent transferases	F: Aminotran_3_N	ECOD (1.6)
B	UNK_F_TYPE	e6cbmB1	A: a+b two layers	X: C-terminal domain in some PLP-dependent transferases (From Topology)	H: C-terminal domain in some PLP-dependent transferases (From Topology)	T: C-terminal domain in some PLP-dependent transferases	F: UNK_F_TYPE	ECOD (1.6)
B	Aminotran_3_N	e6cbmB2	A: a/b three-layered sandwiches	X: PLP-dependent transferases (From Topology)	H: PLP-dependent transferases (From Topology)	T: PLP-dependent transferases	F: Aminotran_3_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00202	Aminotransferase class-III (Aminotran_3)	Aminotransferase class-III	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Neamine transaminase NeoN	transferase activity, transferring nitrogenous groups transaminase activity transferase activity catalytic activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding organic cyclic compound binding anion binding heterocyclic compound binding small molecule binding	aminoglycoside antibiotic biosynthetic process carbohydrate derivative biosynthetic process polyol metabolic process glycosyl compound metabolic process glycosyl compound biosynthetic process small molecule biosynthetic process glycoside metabolic process organic hydroxy compound metabolic process carbohydrate derivative metabolic process alcohol metabolic process neomycin metabolic process neomycin biosynthetic process antibiotic biosynthetic process glycoside biosynthetic process antibiotic metabolic process aminoglycoside antibiotic biosynthetic process carbohydrate derivative biosynthetic process polyol metabolic process glycosyl compound metabolic process glycosyl compound biosynthetic process small molecule biosynthetic process glycoside metabolic process organic hydroxy compound metabolic process carbohydrate derivative metabolic process alcohol metabolic process neomycin metabolic process neomycin biosynthetic process antibiotic biosynthetic process glycoside biosynthetic process antibiotic metabolic process aminoglycoside antibiotic metabolic process biosynthetic process organic hydroxy compound biosynthetic process polyol biosynthetic process alcohol biosynthetic process metabolic process small molecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A, B	IPR005814	Aminotransferase class-III	Family
A, B	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A, B	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.