6CBE | pdb_00006cbe

Atomic structure of a rationally engineered gene delivery vector, AAV2.5

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth t]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
YA [auth s]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
XA [auth r]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
WA [auth q]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
VA [auth p]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
UA [auth o]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
TA [auth n]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
SA [auth m]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
RA [auth l]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
QA [auth k]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
PA [auth j]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
OA [auth i]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
NA [auth h]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
MA [auth g]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
LA [auth f]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
KA [auth e]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
JA [auth d]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
IA [auth c]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
HB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
HA [auth b]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
GB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
GA [auth a]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
FB [auth z]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
FA [auth 5]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
EB [auth y]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
EA [auth 4]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
DB [auth x]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
DA [auth 3]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
CB [auth w]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
CA [auth 2]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
BB [auth v]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
BA [auth 1]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
AB [auth u]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
AA [auth 0]	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8041416	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth t]	e6cbet1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
Z	e6cbeZ1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
YA [auth s]	e6cbes1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
Y	e6cbeY1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
XA [auth r]	e6cber1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
X	e6cbeX1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
WA [auth q]	e6cbeq1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
W	e6cbeW1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
VA [auth p]	e6cbep1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
V	e6cbeV1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
UA [auth o]	e6cbeo1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
U	e6cbeU1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
TA [auth n]	e6cben1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
T	e6cbeT1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
SA [auth m]	e6cbem1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
S	e6cbeS1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
RA [auth l]	e6cbel1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
R	e6cbeR1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
QA [auth k]	e6cbek1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
Q	e6cbeQ1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
PA [auth j]	e6cbej1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
P	e6cbeP1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
OA [auth i]	e6cbei1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
O	e6cbeO1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
NA [auth h]	e6cbeh1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
N	e6cbeN1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
MA [auth g]	e6cbeg1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
M	e6cbeM1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
LA [auth f]	e6cbef1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
L	e6cbeL1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
KA [auth e]	e6cbee1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
K	e6cbeK1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
JA [auth d]	e6cbed1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
J	e6cbeJ1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
IA [auth c]	e6cbec1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
I	e6cbeI1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
HB [auth 7]	e6cbe71	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
HA [auth b]	e6cbeb1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
H	e6cbeH1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
GB [auth 6]	e6cbe61	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
GA [auth a]	e6cbea1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
G	e6cbeG1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
FB [auth z]	e6cbez1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
FA [auth 5]	e6cbe51	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
F	e6cbeF1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
EB [auth y]	e6cbey1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
EA [auth 4]	e6cbe41	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
E	e6cbeE1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
DB [auth x]	e6cbex1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
DA [auth 3]	e6cbe31	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
D	e6cbeD1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
CB [auth w]	e6cbew1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
CA [auth 2]	e6cbe21	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
C	e6cbeC1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
BB [auth v]	e6cbev1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
BA [auth 1]	e6cbe11	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
B	e6cbeB1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
AB [auth u]	e6cbeu1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
AA [auth 0]	e6cbe01	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: DEAD	F:	ECOD (20:10:01)
A	e6cbeA1	A: OB-fold	X: Nucleic acid-binding protein	H: Nucleotidyltransferase	T: Pannexin_like	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 0], AB [auth u], B, BA [auth 1], A, AA [auth 0], AB [auth u], B, BA [auth 1], BB [auth v], C, CA [auth 2], CB [auth w], D, DA [auth 3], DB [auth x], E, EA [auth 4], EB [auth y], F, FA [auth 5], FB [auth z], G, GA [auth a], GB [auth 6], H, HA [auth b], HB [auth 7], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	Capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nucleus other organism part host cell nucleolus host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 0], AB [auth u], B, BA [auth 1], A, AA [auth 0], AB [auth u], B, BA [auth 1], BB [auth v], C, CA [auth 2], CB [auth w], D, DA [auth 3], DB [auth x], E, EA [auth 4], EB [auth y], F, FA [auth 5], FB [auth z], G, GA [auth a], GB [auth 6], H, HA [auth b], HB [auth 7], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth 0], AB [auth u], B, BA [auth 1], A, AA [auth 0], AB [auth u], B, BA [auth 1], BB [auth v], C, CA [auth 2], CB [auth w], D, DA [auth 3], DB [auth x], E, EA [auth 4], EB [auth y], F, FA [auth 5], FB [auth z], G, GA [auth a], GB [auth 6], H, HA [auth b], HB [auth 7], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 0], AB [auth u], B, BA [auth 1], A, AA [auth 0], AB [auth u], B, BA [auth 1], BB [auth v], C, CA [auth 2], CB [auth w], D, DA [auth 3], DB [auth x], E, EA [auth 4], EB [auth y], F, FA [auth 5], FB [auth z], G, GA [auth a], GB [auth 6], H, HA [auth b], HB [auth 7], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 0], AB [auth u], B, BA [auth 1], A, AA [auth 0], AB [auth u], B, BA [auth 1], BB [auth v], C, CA [auth 2], CB [auth w], D, DA [auth 3], DB [auth x], E, EA [auth 4], EB [auth y], F, FA [auth 5], FB [auth z], G, GA [auth a], GB [auth 6], H, HA [auth b], HB [auth 7], I, IA [auth c], J, JA [auth d], K, KA [auth e], L, LA [auth f], M, MA [auth g], N, NA [auth h], O, OA [auth i], P, PA [auth j], Q, QA [auth k], R, RA [auth l], S, SA [auth m], T, TA [auth n], U, UA [auth o], V, VA [auth p], W, WA [auth q], X, XA [auth r], Y, YA [auth s], Z, ZA [auth t]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily