6C43 | pdb_00006c43

2.9 Angstrom Resolution Crystal Structure of Gamma-Aminobutyraldehyde Dehydrogenase from Salmonella typhimurium.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6c43h_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
G	d6c43g_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
F	d6c43f_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
E	d6c43e_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
D	d6c43d_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
C	d6c43c_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
B	d6c43b_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)
A	d6c43a_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	(Salmonella enterica ) [TaxId: 28901 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ALDH-like	8072419	3001479	SCOP2B (2022-06-29)
A	SCOP2 Family	ALDH-like	8072418	4000806	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ALDH-like	8072419	3001479	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Actin	e6c43H1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
G	Actin	e6c43G1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
F	Actin	e6c43F1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
E	Actin	e6c43E1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
D	Actin	e6c43D1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
C	Actin	e6c43C1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
B	Actin	e6c43B1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
A	Pkinase	e6c43A1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Pkinase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
H	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
G	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
G	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
F	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
F	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
E	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
E	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
D	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
D	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
C	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
C	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
B	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
B	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
A	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
A	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00171	Aldehyde dehydrogenase family (Aldedh)	Aldehyde dehydrogenase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Gamma-aminobutyraldehyde dehydrogenase	NAD binding binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity aldehyde dehydrogenase (NAD+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors aminobutyraldehyde dehydrogenase (NAD+) activity catalytic activity aldehyde dehydrogenase [NAD(P)+] activity NAD binding binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity aldehyde dehydrogenase (NAD+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors aminobutyraldehyde dehydrogenase (NAD+) activity catalytic activity aldehyde dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	catabolic process polyamine metabolic process biogenic amine catabolic process amine metabolic process putrescine catabolic process putrescine metabolic process metabolic process cellular process polyamine catabolic process biogenic amine metabolic process amine catabolic process oxoacid metabolic process L-lysine catabolic process L-amino acid catabolic process catabolic process polyamine metabolic process biogenic amine catabolic process amine metabolic process putrescine catabolic process putrescine metabolic process metabolic process cellular process polyamine catabolic process biogenic amine metabolic process amine catabolic process oxoacid metabolic process L-lysine catabolic process L-amino acid catabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process carboxylic acid catabolic process small molecule metabolic process small molecule catabolic process amino acid catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015657	Aminobutyraldehyde dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029510	Aldehyde dehydrogenase, glutamic acid active site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR017749	Gamma-aminobutyraldehyde dehydrogenase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.