Cryo-EM structure of PRC2 bound to cofactors AEBP2 and JARID2 in the Compact Active State
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F [auth N] | SCOP2B Superfamily | WD40 repeat-like | 8053350 | 3001694 | SCOP2B (2022-06-29) |
| E [auth M] | SCOP2B Superfamily | VEFS box-like | 8090819 | 3002459 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth P] | UNK_F_TYPE | e6c23P1 | A: beta barrels | X: SH3 | H: Chromo domain-like (From Topology) | T: Chromo domain-like | F: UNK_F_TYPE | ECOD (1.6) |
| F [auth N] | ANAPC4_WD40_20 | e6c23N1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_20 | ECOD (1.6) |
| D [auth L] | ANAPC4_WD40_5 | e6c23L1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
| C [auth K] | SET | e6c23K1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET | ECOD (1.6) |
| C [auth K] | Myb_DNA-binding_3 | e6c23K4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
| C [auth K] | KOG1079_4th | e6c23K3 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_4th | ECOD (1.6) |
| C [auth K] | KOG1079_3rd | e6c23K5 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_3rd | ECOD (1.6) |
| C [auth K] | KOG1079_2nd | e6c23K2 | A: few secondary structure elements | X: Ezh2 MCSS domain (From Topology) | H: Ezh2 MCSS domain (From Topology) | T: Ezh2 MCSS domain | F: KOG1079_2nd | ECOD (1.6) |
| K [auth C] | KOG1079_1st | e6c23C2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: KOG1079_1st | ECOD (1.6) |
| K [auth C] | EZH2_WD-Binding | e6c23C1 | A: extended segments | X: Ezh2 N-terminal domain (From Topology) | H: Ezh2 N-terminal domain (From Topology) | T: Ezh2 N-terminal domain | F: EZH2_WD-Binding | ECOD (1.6) |
| E [auth M] | VEFS-Box | e6c23M1 | A: alpha arrays | X: lambda integrase-N-like | H: VEFS domain (From Topology) | T: VEFS domain | F: VEFS-Box | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth N] | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
| D [auth L] | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| F [auth N] | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd) | Histone-binding protein RBBP4 or subunit C of CAF1 complex | - | Repeat |
| F [auth N] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| D [auth L] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| C [auth K], K [auth C] | PF18264 | CXC domain (preSET_CXC) | CXC domain | This domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain. | Domain |
| C [auth K], K [auth C] | PF00856 | SET domain (SET) | SET domain | - | Family |
| C [auth K], K [auth C] | PF18118 | Polycomb repressive complex 2 tri-helical domain (PRC2_HTH_1) | Polycomb repressive complex 2 tri-helical domain | This domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain mak ... | Domain |
| C [auth K], K [auth C] | PF11616 | WD repeat binding protein EZH2 (EZH2_WD-Binding) | WD repeat binding protein EZH2 | - | Family |
| A, E [auth M], I [auth Q] | PF09733 | VEFS-Box of polycomb protein (VEFS-Box) | VEFS-Box of polycomb protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| L [auth B] | M3L | Parent Component: LYS :  AA0074 :  N6,N6,N6-trimethyl-L-lysine MOD:00083 |
| J [auth Z] | UNK | :  AA0074 |














