Cryo-EM structure of CENP-A nucleosome in complex with kinetochore protein CENP-N
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Core histone-like | 8039342 | 3001387 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Core histone-like | 8039342 | 3001387 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Core histone-like | 8070539 | 3001387 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Core histone-like | 8070539 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | UQ_con | e6buzF1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: UQ_con | ECOD (v295.2) |
| B | UQ_con | e6buzB1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: UQ_con | ECOD (v295.2) |
| K [auth N] | CENP-N | e6buzN1 | A: alpha arrays | X: PriB N-terminal domain-like | H: Ubiquitin-related | T: Ubiquitin-like | F: CENP-N | ECOD (v295.2) |
| D | e6buzD1 | A: alpha arrays | X: Cryptochrome/photolyase FAD-binding domain-related | H: Cryptochrome/photolyase FAD-binding domain-related | T: Undecaprenyl diphosphate synthase | F: | ECOD (v295.2) | |
| H | UQ_con | e6buzH1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: UQ_con | ECOD (v295.2) |
| G | UQ_con | e6buzG1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: UQ_con | ECOD (v295.2) |
| C | e6buzC1 | A: alpha arrays | X: Cryptochrome/photolyase FAD-binding domain-related | H: Cryptochrome/photolyase FAD-binding domain-related | T: Undecaprenyl diphosphate synthase | F: | ECOD (v295.2) | |
| A | e6buzA1 | A: alpha arrays | X: Cryptochrome/photolyase FAD-binding domain-related | H: Cryptochrome/photolyase FAD-binding domain-related | T: Undecaprenyl diphosphate synthase | F: | ECOD (v295.2) | |
| E | UQ_con | e6buzE1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: UQ_con | ECOD (v295.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| B | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| D | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| H | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| G | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| C | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| A | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
| E | 1.10.20.10 | Mainly Alpha | Orthogonal Bundle | Histone, subunit A | Histone, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
| K [auth N] | PF05238 | Centromere protein Chl4/mis15/CENP-N (CENP-N) | Centromere protein Chl4/mis15/CENP-N | - | Family |
| PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |