6BN7 | pdb_00006bn7

Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET23 PROTAC.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyBromodomain 8084245 3001843 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8051194 3001694 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyWD40 repeat-like 8052530 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BYippee-Mis18e6bn7B1 A: alpha bundlesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: Yippee-Mis18ECOD (develop294)
CDEADe6bn7C1 A: alpha bundlesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: DEADECOD (develop294)
AYippee-Mis18e6bn7A1 A: alpha bundlesX: Phosphorylase/hydrolase-likeH: Peptidyl-tRNA hydrolase-likeT: Peptidyl-tRNA hydrolase-likeF: Yippee-Mis18ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02190ATP-dependent protease La (LON) substrate-binding domain (LON_substr_bdg)ATP-dependent protease La (LON) substrate-binding domain- Family
PF03226Yippee zinc-binding/DNA-binding /Mis18, centromere assembly (Yippee-Mis18)Yippee zinc-binding/DNA-binding /Mis18, centromere assemblyThis family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of ...This family includes both Yippee-type proteins and Mis18 kinetochore proteins. Yippee are putative zinc-binding/DNA-binding proteins. Mis18 are proteins involved in the priming of centromeres for recruiting CENP-A. Mis18-alpha and beta form part of a small complex with Mis18-binding protein. Mis18-alpha is found to interact with DNA de-methylases through a Leu-rich region located at its carboxyl terminus [5]. This entry also includes the CULT domain proteins such as Cereblon [6].
Domain
PF00439Bromodomain (Bromodomain)BromodomainBromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. Domain
PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)RSE1/DDB1/CPSF1 first beta-propeller- Repeat
PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein cereblon
Bromodomain-containing protein 4
DNA damage-binding protein 1

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ96SW2
PharosO60885
PharosQ16531