6BM7 | pdb_00006bm7

Crystal structure of Trypanosoma brucei AdoMetDC/prozyme heterodimer in complex with pyrimidineamine inhibitor UTSAM568

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Actin	e6bm7F1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
E	Prenyltransf	e6bm7E1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Undecaprenyl diphosphate synthase	F: Prenyltransf	ECOD (v294.1)
D	Actin	e6bm7D1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Actin	ECOD (v294.1)
B	Prenyltransf	e6bm7B1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Undecaprenyl diphosphate synthase	F: Prenyltransf	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.60.90.10	Alpha Beta	4-Layer Sandwich	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase	CATH (4.3.0)
B	3.60.90.10	Alpha Beta	4-Layer Sandwich	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF01536	Adenosylmethionine decarboxylase (SAM_decarbox)	Adenosylmethionine decarboxylase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F	Inactive S-adenosylmethionine decarboxylase prozyme	enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity adenosylmethionine decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity protein heterodimerization activity protein binding binding protein dimerization activity enzyme binding	polyamine metabolic process amine metabolic process biogenic amine biosynthetic process spermidine metabolic process biosynthetic process amine biosynthetic process polyamine biosynthetic process metabolic process cellular process spermidine biosynthetic process biogenic amine metabolic process trypanothione biosynthetic process sulfur compound biosynthetic process glutathione derivative biosynthetic process polyamine metabolic process amine metabolic process biogenic amine biosynthetic process spermidine metabolic process biosynthetic process amine biosynthetic process polyamine biosynthetic process metabolic process cellular process spermidine biosynthetic process biogenic amine metabolic process trypanothione biosynthetic process sulfur compound biosynthetic process glutathione derivative biosynthetic process sulfur compound metabolic process trypanothione metabolic process S-adenosylmethionine metabolic process positive regulation of molecular function regulation of molecular function regulation of catalytic activity biological regulation positive regulation of catalytic activity regulation of cellular process positive regulation of biological process regulation of polyamine biosynthetic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of amine metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of spermidine biosynthetic process regulation of biological process regulation of amine metabolic process primary metabolic process positive regulation of spermidine biosynthetic process regulation of metabolic process spermine metabolic process spermine biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex catalytic complex
B, D	S-adenosylmethionine decarboxylase alpha chain	adenosylmethionine decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	polyamine metabolic process amine metabolic process biogenic amine biosynthetic process spermidine metabolic process biosynthetic process amine biosynthetic process polyamine biosynthetic process metabolic process cellular process spermidine biosynthetic process biogenic amine metabolic process spermine metabolic process spermine biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
A, C	S-adenosylmethionine decarboxylase beta chain	adenosylmethionine decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	polyamine metabolic process amine metabolic process biogenic amine biosynthetic process spermidine metabolic process biosynthetic process amine biosynthetic process polyamine biosynthetic process metabolic process cellular process spermidine biosynthetic process biogenic amine metabolic process spermine metabolic process spermine biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F	IPR016067	S-adenosylmethionine decarboxylase, core	Homologous Superfamily
E, F	IPR048283	S-adenosylmethionine decarboxylase-like	Family
B, D	IPR016067	S-adenosylmethionine decarboxylase, core	Homologous Superfamily
B, D	IPR001985	S-adenosylmethionine decarboxylase, eukaryotes	Family
B, D	IPR048283	S-adenosylmethionine decarboxylase-like	Family
B, D	IPR018166	S-adenosylmethionine decarboxylase, conserved site	Conserved Site
A, C	IPR016067	S-adenosylmethionine decarboxylase, core	Homologous Superfamily
A, C	IPR001985	S-adenosylmethionine decarboxylase, eukaryotes	Family
A, C	IPR048283	S-adenosylmethionine decarboxylase-like	Family
A, C	IPR018166	S-adenosylmethionine decarboxylase, conserved site	Conserved Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D	PYR	RESID: AA0127 PSI-MOD : pyruvic acid (Cys) MOD:00136 , pyruvic acid (Ser) MOD:00807 , pyruvic acid MOD:01154 , pyruvic acid (Tyr) MOD:01661

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.