6BIQ | pdb_00006biq

Structure of NlpC2 from Trichomonas vaginalis

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	SH3_3	e6biqD3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_3	ECOD (1.6)
D	UNK_F_TYPE	e6biqD1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: UNK_F_TYPE	ECOD (1.6)
D	NLPC_P60	e6biqD2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: NLPC_P60	ECOD (1.6)
C	SH3_3	e6biqC1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_3	ECOD (1.6)
C	UNK_F_TYPE	e6biqC3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: UNK_F_TYPE	ECOD (1.6)
C	NLPC_P60	e6biqC2	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: NLPC_P60	ECOD (1.6)
B	SH3_3	e6biqB3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_3	ECOD (1.6)
B	UNK_F_TYPE	e6biqB2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: UNK_F_TYPE	ECOD (1.6)
B	NLPC_P60	e6biqB1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: NLPC_P60	ECOD (1.6)
A	SH3_3	e6biqA3	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SH3_3	ECOD (1.6)
A	UNK_F_TYPE	e6biqA2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: UNK_F_TYPE	ECOD (1.6)
A	NLPC_P60	e6biqA1	A: a+b complex topology	X: Cysteine proteinases-like	H: Cysteine proteinases (From Topology)	T: Cysteine proteinases	F: NLPC_P60	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.90.1720.10	Alpha Beta	Alpha-Beta Complex	endopeptidase fold (from Nostoc punctiforme)	endopeptidase domain like (from Nostoc punctiforme)	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00877	NlpC/P60 family (NLPC_P60)	NlpC/P60 family	The function of this domain is unknown. It is found in several lipoproteins.	Domain
A, B, C, D	PF08239	Bacterial SH3 domain (SH3_3)	Bacterial SH3 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Clan CA, family C40, NlpC/P60 superfamily cysteine peptidase	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000064	Endopeptidase, NLPC/P60 domain	Domain
A, B, C, D	IPR003646	SH3-like domain, bacterial-type	Domain
A, B, C, D	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D	IPR051794	Peptidoglycan Endopeptidase C40	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.