6BI4 | pdb_00006bi4

2.9 Angstrom Resolution Crystal Structure of dTDP-Glucose 4,6-dehydratase (rfbB) from Bacillus anthracis str. Ames in Complex with NAD.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6bi4d1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
D	d6bi4d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
C	d6bi4c1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
C	d6bi4c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
B	d6bi4b1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
B	d6bi4b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
A	d6bi4a1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)
A	d6bi4a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bacillus anthracis str. Ames ) [TaxId: 198094 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	SDR-like	8066226	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8066226	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8066226	3000038	SCOP2B (2022-06-29)
A	SCOP2 Family	UDP-glucose 4-epimerase GalE-lke	8066225	4000088	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8066226	3000038	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	RRM_1	e6bi4D1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
C	RRM_1	e6bi4C1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
B	RRM_1	e6bi4B1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)
A	RRM_1	e6bi4A1	A: a/b three-layered sandwiches	X: SH3	H: SH3	T: SH3	F: RRM_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.90.25.10	Alpha Beta	Alpha-Beta Complex	UDP-galactose 4-epimerase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16363	GDP-mannose 4,6 dehydratase (GDP_Man_Dehyd)	GDP-mannose 4,6 dehydratase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	dTDP-glucose 4,6-dehydratase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding hydro-lyase activity lyase activity dTDP-glucose 4,6-dehydratase activity catalytic activity carbon-oxygen lyase activity	nucleoside phosphate metabolic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process primary metabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR005888	dTDP-glucose 4,6-dehydratase	Family
A, B, C, D	IPR016040	NAD(P)-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.