Cryo-EM structure of the activated RHEB-mTORC1 refined to 3.4 angstrom
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth R] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057364 | 3002022 | SCOP2B (2022-06-29) |
| E [auth S] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057364 | 3002022 | SCOP2B (2022-06-29) |
| F [auth B] | SCOP2B Superfamily | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 8036936 | 3001600 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) | 8036936 | 3001600 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J [auth R] | p450 | e6bcuR1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: p450 | ECOD (v295.2) |
| E [auth S] | e6bcuS1 | A: alpha arrays | X: Cryptochrome/photolyase FAD-binding domain-related | H: Cryptochrome/photolyase FAD-binding domain-related | T: Undecaprenyl diphosphate synthase | F: | ECOD (v295.2) | |
| I [auth Z] | AAA_lid_3 | e6bcuZ1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: AAA_lid_3 | ECOD (v295.2) |
| D [auth X] | BRF1 | e6bcuX01 | A: alpha arrays | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: BRF1 | ECOD (v295.2) |
| H [auth Y] | Helicase_C | e6bcuY1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: Helicase_C | ECOD (v295.2) |
| C [auth W] | Helicase_C | e6bcuW1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: Helicase_C | ECOD (v295.2) |
| G [auth E] | p450 | e6bcuE1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: p450 | ECOD (v295.2) |
| B [auth D] | p450 | e6bcuD1 | A: alpha arrays | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C | T: FAD-linked reductases-C | F: p450 | ECOD (v295.2) |
| F [auth B] | Helicase_C | e6bcuB1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: Helicase_C | ECOD (v295.2) |
| A | Helicase_C | e6bcuA1 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Aspartate/ornithine carbamoyltransferase | F: Helicase_C | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| E [auth S], J [auth R] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motili ... | Domain |
| C [auth W], H [auth Y] | PF14538 | Raptor N-terminal CASPase like domain (Raptor_N) | Raptor N-terminal CASPase like domain | This domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. | Domain |
| C [auth W], H [auth Y] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| C [auth W], H [auth Y] | PF02985 | HEAT repeat (HEAT) | HEAT repeat | - | Repeat |
| B [auth D], G [auth E] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| A, F [auth B] | PF02260 | FATC domain (FATC) | FATC domain | - | Family |
| A, F [auth B] | PF23593 | Serine/threonine-protein kinase ATR-like, HEAT repeats (HEAT_ATR) | Serine/threonine-protein kinase ATR-like, HEAT repeats | - | Repeat |
| A, F [auth B] | PF08771 | FKBP12-rapamycin binding domain (FRB_dom) | FKBP12-rapamycin binding domain | The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ... | Domain |
| A, F [auth B] | PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family |
| A, F [auth B] | PF11865 | Serine/threonine-protein kinase mTOR domain (mTOR_dom) | Serine/threonine-protein kinase mTOR domain | - | Repeat |
| A, F [auth B] | PF02259 | FAT domain (FAT) | FAT domain | - | Repeat |














